Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27600 791 / 0 ATSKD1, VPS4, SKD1 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) AT1G80350 280 / 3e-89 FTR, FRC2, FRA2, BOT1, ATKTN1, AAA1, LUE1, ERH3, MAD5 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G34560 271 / 2e-87 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G45500 265 / 1e-83 AAA-type ATPase family protein (.1.2) AT3G27120 241 / 1e-74 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G08270 202 / 2e-64 unknown protein AT1G50140 211 / 3e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G19740 209 / 2e-59 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G64110 201 / 3e-57 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT4G28000 198 / 4e-56 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043381 [exp] 859 / 0 AT2G27600 778 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10004891 [exp] 834 / 0 AT2G27600 801 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10020589 [exp] 807 / 0 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10023115 [exp] 279 / 1e-88 AT1G80350 906 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011477 [exp] 278 / 2e-88 AT1G80350 904 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038499 [exp] 260 / 1e-82 AT2G34560 579 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10038001 [exp] 252 / 8e-79 AT2G45500 679 / 0.0 AAA-type ATPase family protein (.1.2) Lus10009233 [exp] 248 / 2e-77 AT2G45500 670 / 0.0 AAA-type ATPase family protein (.1.2) Lus10023310 [exp] 249 / 1e-76 AT2G34560 551 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G184500 [exp] 820 / 0 AT2G27600 740 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.009G144300 [exp] 819 / 0 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.010G237100 [exp] 725 / 0 AT2G27600 702 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.008G022300 [exp] 716 / 0 AT2G27600 703 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.008G022216 [exp] 714 / 0 AT2G27600 701 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.001G176900 [exp] 280 / 4e-89 AT1G80350 809 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G057800 [exp] 273 / 2e-86 AT1G80350 814 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.011G085200 [exp] 267 / 1e-85 AT2G34560 577 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G065100 [exp] 266 / 2e-85 AT2G34560 600 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.014G071900 [exp] 253 / 9e-79 AT2G45500 696 / 0.0 AAA-type ATPase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04212 [flax] [poplar] MIT MIT (microtubule interacting and transport) domain CL0671 [flax] [poplar] AAA_lid PF09336 [flax] [poplar] Vps4_C Vps4 C terminal oligomerisation domain CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10019537 pacid=23181539 polypeptide=Lus10019537 locus=Lus10019537.g ID=Lus10019537.BGIv1.0 annot-version=v1.0 ATGTACAGCAACTTCAAGGAGCAGGCTATAGAGTATGTCAAGCAAGCCGTCCAGGAAGACAATGCCGGGAACTATGCCAAGGCTTTCCCTCTGTACATGA ACGCTCTCGAGTACTTCAAGACCCATCTGAAATACGAGAAGAACCCCAAAATCCGTGAAGCCATTACTGGTAAATTTACAGAGTACCTCCGCCGCGCCGA GGAGATTCGCGCCGTGTTGGATGAGGGTGGGCCTGGTCCGGCTTCCAACGGCGATGCTGCCGTGGCTACGCGGCCCAAGACCAAGCCGAAGGATGGGGAA GATGGGGAGGACCCTGAGCAGTCCAAACTCAGAGCTGGTTTGAATTCCGCGATTATTAGGGAGAAGCCTAACATCAAGTGGAGTGACGTAGCTGGGCTTG AGAGCGCCAAGCAGTCTCTTCAGGAGGCTGTTATTTTGCCGGTCAAGTTCCCCCAGTTCTTTACAGGCAAGAGACGGCCGTGGAAGGCGTTTCTTCTATA CGGGCCTCCTGGTACTGGAAAGTCTTACTTGGCCAAGGCTGTTGCAACTGAAGCAGATTCTACATTCTTTAGTGTTTCTTCCTCAGACCTGGTATCAAAG TGGATGGGTGAGAGTGAGAAACTTGTTTCGAACCTTTTCCAGATGGCCCGTGAAAGTGCACCTTCTATCATCTTTGTTGATGAAATAGATTCCTTGTGTG GCCAACGTGGTGAAGGCAACGAAAGTGAAGCATCAAGGCGGATTAAGACCGAACTTCTTGTCCAAATGCAGGGCGTAGGGAATAACGATCAGAAGGTTCT TGTGCTTGCAGCAACCAATACACCATATGCACTTGACCAGGCTATCAGGCGTCGTTTTGACAAGCGTATCTACATCCCTCTACCTGATGCGAAGGCCAGA CAATACATGTTCAAGGTTCACCTTGGTGATACACCTCATGACTTAAATGAAAGTGATTTTGAAAGTTTAGGCCGTAAGACAGAGGGCTTCTCAGGTTCAG ATATATCAGTCTGTGTCAAGGATGTTCTGTTTGAGCCTGTCCGTAAAACACAAGATGCCATGTATTTCTTCAACACCTCAAATGGGATGTGGGTGCCTTG CGGACCAAAGCAAGCCGGTGCAGTACAAACGACCATGCAGGATCTGGCAACAACAGGAGAAGCGGCCAAGATCCTTCCACCCCCGATTTCGAAGAATGAT TTTGATAAGGTCCTCACTAGACAGAGGCCGACAGTGAGCAAAGGTGATCTAGAGGTTCACGAAAGATTCACAAAGGAGTTTGGAGAGGAAGGTTAA
AA sequence Show only first row Show all	>Lus10019537 pacid=23181539 polypeptide=Lus10019537 locus=Lus10019537.g ID=Lus10019537.BGIv1.0 annot-version=v1.0 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIREAITGKFTEYLRRAEEIRAVLDEGGPGPASNGDAAVATRPKTKPKDGE DGEDPEQSKLRAGLNSAIIREKPNIKWSDVAGLESAKQSLQEAVILPVKFPQFFTGKRRPWKAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSK WMGESEKLVSNLFQMARESAPSIIFVDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDAKAR QYMFKVHLGDTPHDLNESDFESLGRKTEGFSGSDISVCVKDVLFEPVRKTQDAMYFFNTSNGMWVPCGPKQAGAVQTTMQDLATTGEAAKILPPPISKND FDKVLTRQRPTVSKGDLEVHERFTKEFGEEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10019537 [exp]	0	1
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10006771 [exp]	1.4	0.8786
AT2G01680			Ankyrin repeat family protein ...		Lus10034579 [exp]	2.4	0.8693
AT1G74860			unknown protein		Lus10036649 [exp]	3.2	0.8276
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Lus10037759 [exp]	5.2	0.8519
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10005868 [exp]	5.7	0.7936
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10014176 [exp]	5.9	0.8388
AT5G15860		ICME, ATPCME	Isoprenylcysteine methylestera...		Lus10034399 [exp]	6.0	0.8236
AT1G34220			Regulator of Vps4 activity in ...		Lus10006061 [exp]	6.2	0.8230
AT1G17820			Putative integral membrane pro...		Lus10018266 [exp]	6.3	0.8510
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Lus10041917 [exp]	6.7	0.8491

Compare expression of checked genes

Lus10019537 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.