Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61220 233 / 2e-75 SDR1 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G24190 231 / 7e-75 SDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G01800 226 / 6e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G51030 192 / 2e-59 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G59710 168 / 3e-50 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G61830 165 / 8e-49 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G37540 57 / 3e-09 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 57 / 4e-09 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G27760 56 / 2e-08 FEY3, FEY FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50700 55 / 2e-08 HSD1 hydroxysteroid dehydrogenase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008413 [exp] 410 / 7e-145 AT2G24190 273 / 3e-91 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014690 [exp] 245 / 3e-80 AT3G61220 335 / 2e-115 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040933 [exp] 241 / 8e-79 AT3G61220 342 / 1e-118 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014688 [exp] 241 / 2e-78 AT3G61220 348 / 8e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014689 [exp] 235 / 2e-73 AT3G61220 336 / 2e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006893 [exp] 224 / 4e-72 AT3G61220 313 / 4e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014694 [exp] 224 / 1e-71 AT3G61220 369 / 4e-129 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006894 [exp] 223 / 3e-71 AT3G61220 325 / 1e-111 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014693 [exp] 222 / 6e-71 AT3G61220 347 / 3e-120 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G158200 [exp] 445 / 4e-158 AT2G24190 283 / 1e-94 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235500 [exp] 260 / 4e-86 AT3G61220 313 / 7e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080000 [exp] 256 / 2e-84 AT3G61220 332 / 2e-114 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G157000 [exp] 253 / 2e-83 AT3G61220 406 / 9e-144 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235600 [exp] 247 / 6e-81 AT3G61220 285 / 1e-95 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156300 [exp] 242 / 6e-79 AT3G61220 367 / 6e-128 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156800 [exp] 239 / 9e-78 AT3G61220 363 / 1e-126 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156600 [exp] 233 / 1e-75 AT3G61220 348 / 7e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080100 [exp] 227 / 6e-73 AT3G61220 350 / 3e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.012G110200 [exp] 189 / 2e-58 AT5G51030 460 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10019546 pacid=23169928 polypeptide=Lus10019546 locus=Lus10019546.g ID=Lus10019546.BGIv1.0 annot-version=v1.0 ATGGAAGTCCATGGAGCTCAACCAGAACAGGTTGCAGTGGTTACAGGGGCAAATAAAGGTATTGGGTTGGAAACGGTGAGGCAGCTGGCTAGCCATGGGG TCACCGTGGTACTCGCTGCTAGAGATGTGAAGCGAGGGAGCGATGCAACTCTAAGCCTGCATCAGATGGGATTCCCGAATGTTATTTTTCATCAGCTTGA CGTTTTAGATCCAGTCAGCATTCTGAAATTGACAGACTTCTTGAGGCACAAGTTTGGGAAGCTTGATATCTTGGTTAATAATGCTGCAGCTTCAGGAGTG GAAGTTGATGAACAGCAGCTCAAGGACCTAAACATTGAAGTCGACACTTGGCTTTCAGGAAATGCTGTGAACATAGTTAAGGATGTGATGAAGCTGACTT ATGAAAAGGCAGAGGAATGCTTGAACACTAACTACTATGCTGTCAAAAGTTTGACTGAATCATTGCTTCCGCTTCTCCAGCTATCCATTTCTGGTGCCAG GATTGTGAATGTCACTTCTCTCAGGGGTGAGCTATGGAGAATTCGAAGCGATGATCTGAGGAAAGAATTTGCAGAGGTAGAGTGCCTTACCGAAGAGAAA CTGGATAAGATATTGAAGAGATTCTTGCATGCTCTTAAGGAGAACACACTTGAAGCTGGTGGGTGGTCAATGATGCTGCCTGCTTATAGCATCTCCAAGA CAACCCTTAATGCGTACACCAGAATCTTGGCCAGGAGATACCCCAATATGAGGATAAACTGTGTTCATCCTGGGTACGTGAACACAGATTTGAACTGGCA TACAGGGCCAATGTCAGTGGAAGAAGGGGCCAGAGGTTCTTTGAAATGTGCTCTTCTACCAAATGATGGTCCAACTGGTTGCTACTTTGATCAAACTGAG GTTTCCAGCTTCTGA
AA sequence Show only first row Show all	>Lus10019546 pacid=23169928 polypeptide=Lus10019546 locus=Lus10019546.g ID=Lus10019546.BGIv1.0 annot-version=v1.0 MEVHGAQPEQVAVVTGANKGIGLETVRQLASHGVTVVLAARDVKRGSDATLSLHQMGFPNVIFHQLDVLDPVSILKLTDFLRHKFGKLDILVNNAAASGV EVDEQQLKDLNIEVDTWLSGNAVNIVKDVMKLTYEKAEECLNTNYYAVKSLTESLLPLLQLSISGARIVNVTSLRGELWRIRSDDLRKEFAEVECLTEEK LDKILKRFLHALKENTLEAGGWSMMLPAYSISKTTLNAYTRILARRYPNMRINCVHPGYVNTDLNWHTGPMSVEEGARGSLKCALLPNDGPTGCYFDQTE VSSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24190		SDR2	short-chain dehydrogenase/redu...		Lus10019546 [exp]	0	1
AT1G72520		ATLOX4, LOX4	Arabidopsis thaliana lipoxygen...		Lus10027379 [exp]	1.7	0.7318
AT5G42660			Protein of unknown function (D...		Lus10032863 [exp]	3.7	0.7449
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10014759 [exp]	8.1	0.6699
AT1G22450		ATCOX6B2, COX6B	CYTOCHROME C OXIDASE 6B2, cyto...		Lus10020941 [exp]	9.7	0.6535
AT4G23900			Nucleoside diphosphate kinase ...		Lus10003878 [exp]	10.5	0.7365
AT5G67090			Subtilisin-like serine endopep...		Lus10001130 [exp]	11.0	0.7167
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10012420 [exp]	12.8	0.6755
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10024318 [exp]	13.9	0.6819
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Lus10011476 [exp]	14.7	0.7087
AT3G20790			NAD(P)-binding Rossmann-fold s...		Lus10031814 [exp]	24.8	0.7038

Compare expression of checked genes

Lus10019546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.