Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37180 206 / 3e-64 GARP Homeodomain-like superfamily protein (.1.2) AT2G03500 142 / 3e-39 GARP Homeodomain-like superfamily protein (.1) AT1G13300 136 / 2e-37 GARP HRS1 HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1, myb-like transcription factor family protein (.1) AT1G49560 134 / 1e-36 GARP Homeodomain-like superfamily protein (.1) AT1G25550 133 / 2e-36 GARP myb-like transcription factor family protein (.1) AT3G25790 132 / 5e-36 GARP myb-like transcription factor family protein (.1) AT1G68670 128 / 3e-34 GARP myb-like transcription factor family protein (.1) AT2G06020 71 / 6e-14 GARP Homeodomain-like superfamily protein (.1) AT3G13040 71 / 2e-13 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT2G20400 69 / 8e-13 GARP myb-like HTH transcriptional regulator family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009334 [exp] 601 / 0 AT4G37180 213 / 5e-67 Homeodomain-like superfamily protein (.1.2) Lus10012056 [exp] 158 / 1e-45 AT2G03500 164 / 2e-47 Homeodomain-like superfamily protein (.1) Lus10020995 [exp] 149 / 6e-42 AT2G03500 173 / 1e-49 Homeodomain-like superfamily protein (.1) Lus10023857 [exp] 141 / 5e-39 AT2G03500 159 / 2e-44 Homeodomain-like superfamily protein (.1) Lus10043304 [exp] 137 / 7e-37 AT2G03500 341 / 3e-113 Homeodomain-like superfamily protein (.1) Lus10021699 [exp] 127 / 8e-34 AT1G25550 284 / 6e-94 myb-like transcription factor family protein (.1) Lus10035043 [exp] 124 / 8e-33 AT1G68670 281 / 7e-93 myb-like transcription factor family protein (.1) Lus10034280 [exp] 119 / 3e-31 AT1G25550 266 / 3e-87 myb-like transcription factor family protein (.1) Lus10019452 [exp] 108 / 4e-26 AT2G03500 231 / 3e-69 Homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G039400 [exp] 278 / 3e-92 AT4G37180 216 / 2e-67 Homeodomain-like superfamily protein (.1.2) Potri.005G134600 [exp] 258 / 1e-84 AT4G37180 214 / 1e-66 Homeodomain-like superfamily protein (.1.2) Potri.009G106600 [exp] 179 / 2e-53 AT2G03500 196 / 2e-58 Homeodomain-like superfamily protein (.1) Potri.004G144800 [exp] 171 / 7e-50 AT2G03500 189 / 2e-55 Homeodomain-like superfamily protein (.1) Potri.008G117500 [exp] 129 / 1e-34 AT1G68670 298 / 4e-99 myb-like transcription factor family protein (.1) Potri.010G128900 [exp] 106 / 4e-26 AT1G25550 277 / 7e-91 myb-like transcription factor family protein (.1) Potri.018G074200 [exp] 103 / 1e-24 AT2G03500 298 / 6e-97 Homeodomain-like superfamily protein (.1) Potri.006G155200 [exp] 96 / 5e-22 AT2G03500 259 / 8e-82 Homeodomain-like superfamily protein (.1) Potri.018G151400 [exp] 72 / 6e-14 AT3G13040 176 / 4e-50 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G001100 [exp] 69 / 3e-13 AT2G01060 318 / 5e-109 myb-like HTH transcriptional regulator family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10019639 pacid=23139287 polypeptide=Lus10019639 locus=Lus10019639.g ID=Lus10019639.BGIv1.0 annot-version=v1.0 ATGGAGCTGAGCTTGGATTTGGGTCCGGTCTTTGTACCGAAAACAGTTGACCAGTGTCTGAAAGAGGTCTCCAAGCTCAAAGACTCGAATCAGAAGCTGT CCAAGCTCGACGATTTTGTGAATCGGCTGGAAGATGAGCGGAGGAAGATCGATGGATTCCGTAGGGAGCTCCCTCTCTGTTTCCTCCTCTTGACCGATGT TATTTTGAAGCTGAAGGAGGAAGCATTGGTGGTGAAGAGGAATTGTTGCGGCGAAGATGATGAAGAAGGGAAGAATAAGAAGCAGAGCTGGATGGAGTCT GTCCAGCTATGGAGAAATGGAGATTCCACCTGCAAATCTGAGCAGAAACAGAGGAGTGATGAAGAGGACAATCGGTCGACATGTGAGAATCCGATCAAGA AGGGAAGTAGTGGTGTAAGGAAGGAGGAAGAGAAGGAGGTGGTTTCACAGGCGACTGAGCTGTCTCTGATGACTCCATTTGCTGCCGCTACACAGCAAGT GAAGGTCTTTCATGAAACCGTCAATAATAATAAGCCAAGGCTGGGATTAGGACAGCAGTTCAACAAGAAGCAAAGGAGGTGCTGGGCGCCTGAGCTTCAC AGGCTGTTTGTGGATGTGCTTGAAGAGCTTGGAGGGCCTCATGCGGCCACTCCGAAGCAGATAAGAGACAAGATGCAAGTGGAAGGACTCACTAATGATG AAGTCAAAAGCCATTTGCAAAAGTACAGGCTTCATATCCGCAAGCATTCAGCTTCTCCAACTGCCCAAGCTAAATATGGAGGCAATTGCAACGAGACATC GAACGATGTGAACCTTCTGCAGTCCAGTTCTCCACAAGGTCCTTTGGTAGGAAGTGACGGGATATCGGAGAGTCATGATAGCTCGAATGGAGCGATCGAG AAAGCGAATGTATGA
AA sequence Show only first row Show all	>Lus10019639 pacid=23139287 polypeptide=Lus10019639 locus=Lus10019639.g ID=Lus10019639.BGIv1.0 annot-version=v1.0 MELSLDLGPVFVPKTVDQCLKEVSKLKDSNQKLSKLDDFVNRLEDERRKIDGFRRELPLCFLLLTDVILKLKEEALVVKRNCCGEDDEEGKNKKQSWMES VQLWRNGDSTCKSEQKQRSDEEDNRSTCENPIKKGSSGVRKEEEKEVVSQATELSLMTPFAAATQQVKVFHETVNNNKPRLGLGQQFNKKQRRCWAPELH RLFVDVLEELGGPHAATPKQIRDKMQVEGLTNDEVKSHLQKYRLHIRKHSASPTAQAKYGGNCNETSNDVNLLQSSSPQGPLVGSDGISESHDSSNGAIE KANV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37180	GARP		Homeodomain-like superfamily p...		Lus10019639 [exp]	0	1
AT4G37180	GARP		Homeodomain-like superfamily p...		Lus10009334 [exp]	1.0	0.9595
AT2G20830			transferases;folic acid bindin...		Lus10039790 [exp]	5.0	0.9489
AT2G44420			protein N-terminal asparagine ...		Lus10020880 [exp]	7.1	0.9508
AT2G20120		COV1	CONTINUOUS VASCULAR RING, Prot...		Lus10043220 [exp]	12.6	0.9427
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10042516 [exp]	14.1	0.9527
AT2G31090			unknown protein		Lus10017667 [exp]	15.2	0.9401
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Lus10028933 [exp]	15.7	0.9502
AT5G48060			C2 calcium/lipid-binding plant...		Lus10015709 [exp]	16.4	0.9455
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10024835 [exp]	17.8	0.9481
AT4G19160			unknown protein		Lus10025855 [exp]	20.0	0.9451

Compare expression of checked genes

Lus10019639 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.