Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 355 / 4e-103 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G12010 349 / 2e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G14080 329 / 3e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G51630 320 / 2e-91 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT5G11250 318 / 7e-91 Disease resistance protein (TIR-NBS-LRR class) (.1) AT5G46260 311 / 4e-88 disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 304 / 2e-86 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G40910 304 / 2e-86 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 298 / 2e-85 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G44510 298 / 5e-84 TAO1 target of AVRB operation1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009107 [exp] 1132 / 0 AT4G12010 347 / 4e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10018021 [exp] 966 / 0 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015648 [exp] 824 / 0 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10006732 [exp] 798 / 0 AT4G11170 322 / 8e-97 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10006789 [exp] 770 / 0 AT4G12010 325 / 7e-96 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10005813 [exp] 729 / 0 AT3G44480 297 / 2e-84 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10008221 [exp] 714 / 0 AT4G12010 400 / 8e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10023051 [exp] 702 / 0 AT4G12010 415 / 2e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015350 [exp] 684 / 0 AT4G12010 422 / 2e-127 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068300 [exp] 444 / 1e-136 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 436 / 1e-133 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 406 / 2e-121 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 403 / 6e-121 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 402 / 8e-119 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 399 / 1e-118 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 389 / 8e-114 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070300 [exp] 376 / 8e-114 AT5G17680 558 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097800 [exp] 382 / 3e-113 AT5G17680 512 / 3e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 378 / 5e-112 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF07725 [flax] [poplar] LRR_3 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10019654 pacid=23139260 polypeptide=Lus10019654 locus=Lus10019654.g ID=Lus10019654.BGIv1.0 annot-version=v1.0 ATGGACGATATCGACGATATCAAGCAAGCTCCCGACGTAGACAGAGCTAGAATATCTGTAATGACTCGTCAGTACAGTGGGGAATGGGAGTTCGACGCTT TTGTATGTTTCGCAGGCGATGACACACGCCATCTGTTTACCAGCCACCTTGCCGGAAATCTGTGGGACCGGAAAGTCAAAGCCTTCACTGACGAGATTTT TGGCAGAACAATTAACATCGACGAGATACTGCCCCTCATCGGGAGAACTCCTGTGTCAGTTGTGCTATTCTCCAAGAATTTTGCGAAATCAATGTTTTGC CTAGATGAGGTGGTCAGGATTTCTCAACACATGGAAAGATGTGGACATAGAGTGCTGCCAGTTTTCTATAGAGTGGATCCGAAGGATGTCTCAGACGACG AAGACCTTCCTACTGCAAGCAGCCAGGAGGAGAAGGAGAGATGGCTGAAGGCATTGAAGTATGTGGCTAAACATGCTGGGCATACCACGATAGAGATCAA AGACGATTATCAACTGTGTATGAAAATTGTAAACGACGTATTGAAGGCTCTGATAGACGTGTCTTCAAGTGGGAAATTGAAATACTTGGTTGGTATGGAA GCTCGTGTCTTGAAGGTTGAACAATTCTTAGCCATGCAGGGCAACAATTCAAATGCTACTCGTGTTATTGGGCTTTGGGGAATGGGCGGCTTAGGTAAAA CAACTCTGGCCGACGCTTGGTATCATAAGTTGACATCTCCGACAAACTTAGTCAAACATCACTTTGTTTCAGACATCAACGGAAAGTGCAAGGAACGACA TAGAGTTGAGGAACTAGTACTGGAACTATATTCAACTTTATTGTCTGAGAACAACCTTAGTCTCAAAGATTTGGATGTTGTCTTTAGAAGGGAACGCCTG TCCCGCTCGAAGGTGGTTGTTGTTCTTGATAATGTGGAGACTCGACAGCAACTGGATCACTTACTTTTGGGGGAAATTCTTGATCTGAACAAACTTTTTG GTTCCGGAAGTATAATCATTATAACGTCTAGAGACCGGGGAGTGCTTAACCATGCAACGGAGGAAGTGTTCAACGTTGAAGGTTTGAGTTCCCCCGAGTC ACTTCAGCTCTTTATGTTGCATGCATTCAGGCGACCTATATGTGCCACTGATGATTTCATGAATCTGCCCCGTCGCATTGTATCGTATTGCAAGGGAAAC CCTTTAGCATTAAGGGTTTTGGGAGCTGCATTGCATGATAAGGATGAAACCTACTGGAACAGTTTCTTTTCAAGATTGAAAAATATGTCAAACCCAGACA TTCATGATGTTCTTAGTACAAGCTATTATTTCTTGGAAGGTGAATTGCAGAGATTATTTATGGATGTAGCTTCTTTCCTCTTCAACACTCGTCGAACCAG GCTGATGAAGTATCTTGCAACCAGTTATAAATCAGCTTACAGTCTAGTACTGGATCTAATTGACAAGTCCTTGCTAAGTGTACATTCTAACAGCGATCCT GATGAGTTGATCGTGGTGCATGATCTTTTGAAAGAAATGGCTTGGAAGATAGTCAAATCCGAAGGGAATCCTAGTAGGTTAAGGAATCCTAATGATCTTT GCGAACTGTTTGAAGTTGAAGAAGCAGAACAGTACTGTGGGAAATGCTCCGAAGGCAAACCCGAATATGTACACAACAAAGATGCATTTGATGGAGGTAA AGGAATCGAGAGCTTGGTTTTGGACCTTTCTAAAGCGAAGAAGATAGATTTGGGAGCTAAAGCCTTTGATGGTATGAACTCTCTTAGATTTATAGGATTC CACAACCAAGGAGTAGTGCCAGGAGAACCCAAAATCAGGCTACTGAATGGAAGGCTTGACATCCTCCCTAAGGAGTTAAGGTGGTTGGAGTGGTTTGGAT TTCCTTCGGAATATCTTCCTGAAAAGTTTCTTCCTCAAAAGCTTGTTGCACTTATTCTACGTCACAGTCGAATTCAAAGGTGCTGGGAAGGAAAACAGCC AAACCTTGTGCATCTTGTTACCCTTGACCTCTCCTACTCCATAGATCTAAAAGCTCTCCCAGATTTGTCCCAGTGCAAAAAACTGGAGGTACTCCGTCTC AAGGGATGCAAAAGCCTAATTGAGCTACCGTCCCATGTTGAGAATTTGGAAGCGCTAGTTGAGGTTGACGTGTCTGAATGTCAAAATCTTATGTATCTTC CTGCTAGGCTCATCTCGAAATGCTTGAAGTATGTTCGCTTGGCCAAGTGTCCGAAGCTCACTTGTTGTCCTGAGATCGTCAGTTCAGAAGAAGGGGATGT GCTGGAAGTACTGGATTTGGAGGGGACTCCAGTCATGGAACTGCCAAGTGCAATATACAATGTCAAGCGTGGTGGCATCCTACGTCTCTGCGGTAAACAT ATCACTACTTTCCCTCGAGTTTCGAACTGCTTGCAACTGTTTCGGCTGTGCCATACCGCAATGAAACAGATGGATGTTTCTTCTTCTACTACTTCTTTGG ATGACTCATTACCATTGCTCAGATTCGATAAGCTGGAGCTGGTTGGAAACTCCCAACTCGTGAGCTTGTCGAGTAGCATTTGGGATATGGTAAAATACGA GCTTTATGTCGTGGATAGCCCGTTGCTTGAAAGCTTGCCGGATATTGAGAACTCTATCAATGACTTAACAGGGGTTTTTATAGAAAGTTGTGTGAACCTC AAGAGTTTTCCATCTGGGATCGAGAATCTCATCAAATCTGTGCAGACTATCCACTGGTTGGGAACAGCGATACAGTCCATCCCTTCCTCTATTTACCTGC TCGACAAGCTCAGTGTTCTGAATCTGAGTTTCTCACATAGCTTGGAGGAGATCCCGGATGGTCTTAATAGACTTCCCAAGCTATACATGTTAGCTTTGAG GGGTTGTGCCAATTTAAAATCATTGCCTCGACTTCTCCCACCAATGCTGCAGGTTTTAACAATAAGTGGGTGCAAGTCGTTACAAGCTCTACCCAGCAAC ATTTGTGAGCTGAAATTGTCATTTCTACGCTTTGAAAATTGCCTGGAACTTGAGAAAGAGTTGGGCGACCAGATTGTGGCAGGTTTCCATTCTTGTGCTA AGATGTCCCAGAAACCTAAGGGTAGCGTTTTATACTCGGGAAGCTCGCTTCCCGCATGGTGCAGCAACGACTTCTTGAATCACAAAATGGAGTTGCCTAC TAAGCAGCAACAGCAGCTAAATCCTGTGAATAGAATCGTGTTCGCTGTCATTTTTTCTTCGGATGCCACAGTAGTTGAGCTGAGTATGGAATGCAGTATT GTCACAGGCAACAAGACTACCGTTGCTACTTTCTCGAGTCCAGTCATTCGGATTTGCGGTGGAAGTGTCGACTCCCCTTCTGATTATGTGTTTTTGTGGT TTGACAATAAGTTATCAGGCGAACCCAAGGAAGCAATGGAAGACGATGAAGAAGAGGATGAAGAAGCACCAGCTTGGTATATGAAATATGCTGGGAAAAG TGTTTCGTTATGTGTTCGCGCTGTTCCTGAAGAAGAAGATGTCCACAAAGTAAACAGCATCGAATTCAAAAGGCTTAGCATCTTGCTAATGTAG
AA sequence Show only first row Show all	>Lus10019654 pacid=23139260 polypeptide=Lus10019654 locus=Lus10019654.g ID=Lus10019654.BGIv1.0 annot-version=v1.0 MDDIDDIKQAPDVDRARISVMTRQYSGEWEFDAFVCFAGDDTRHLFTSHLAGNLWDRKVKAFTDEIFGRTINIDEILPLIGRTPVSVVLFSKNFAKSMFC LDEVVRISQHMERCGHRVLPVFYRVDPKDVSDDEDLPTASSQEEKERWLKALKYVAKHAGHTTIEIKDDYQLCMKIVNDVLKALIDVSSSGKLKYLVGME ARVLKVEQFLAMQGNNSNATRVIGLWGMGGLGKTTLADAWYHKLTSPTNLVKHHFVSDINGKCKERHRVEELVLELYSTLLSENNLSLKDLDVVFRRERL SRSKVVVVLDNVETRQQLDHLLLGEILDLNKLFGSGSIIIITSRDRGVLNHATEEVFNVEGLSSPESLQLFMLHAFRRPICATDDFMNLPRRIVSYCKGN PLALRVLGAALHDKDETYWNSFFSRLKNMSNPDIHDVLSTSYYFLEGELQRLFMDVASFLFNTRRTRLMKYLATSYKSAYSLVLDLIDKSLLSVHSNSDP DELIVVHDLLKEMAWKIVKSEGNPSRLRNPNDLCELFEVEEAEQYCGKCSEGKPEYVHNKDAFDGGKGIESLVLDLSKAKKIDLGAKAFDGMNSLRFIGF HNQGVVPGEPKIRLLNGRLDILPKELRWLEWFGFPSEYLPEKFLPQKLVALILRHSRIQRCWEGKQPNLVHLVTLDLSYSIDLKALPDLSQCKKLEVLRL KGCKSLIELPSHVENLEALVEVDVSECQNLMYLPARLISKCLKYVRLAKCPKLTCCPEIVSSEEGDVLEVLDLEGTPVMELPSAIYNVKRGGILRLCGKH ITTFPRVSNCLQLFRLCHTAMKQMDVSSSTTSLDDSLPLLRFDKLELVGNSQLVSLSSSIWDMVKYELYVVDSPLLESLPDIENSINDLTGVFIESCVNL KSFPSGIENLIKSVQTIHWLGTAIQSIPSSIYLLDKLSVLNLSFSHSLEEIPDGLNRLPKLYMLALRGCANLKSLPRLLPPMLQVLTISGCKSLQALPSN ICELKLSFLRFENCLELEKELGDQIVAGFHSCAKMSQKPKGSVLYSGSSLPAWCSNDFLNHKMELPTKQQQQLNPVNRIVFAVIFSSDATVVELSMECSI VTGNKTTVATFSSPVIRICGGSVDSPSDYVFLWFDNKLSGEPKEAMEDDEEEDEEAPAWYMKYAGKSVSLCVRAVPEEEDVHKVNSIEFKRLSILLM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12010			Disease resistance protein (TI...		Lus10019654 [exp]	0	1
AT3G21480			BRCT domain-containing DNA rep...		Lus10038633 [exp]	1.4	0.9227
AT4G32272			Nucleotide/sugar transporter f...		Lus10006645 [exp]	2.0	0.9032
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Lus10009796 [exp]	2.4	0.9080
AT2G46060			transmembrane protein-related ...		Lus10002472 [exp]	2.6	0.8979
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Lus10012931 [exp]	3.9	0.8988
AT5G65540			unknown protein		Lus10025712 [exp]	3.9	0.9050
AT5G64150			RNA methyltransferase family p...		Lus10015342 [exp]	5.1	0.8922
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Lus10038081 [exp]	5.5	0.8938
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Lus10041792 [exp]	7.5	0.8694
AT1G60220		ULP1D, OTS1	OVERLY TOLERANT TO SALT 1, UB-...		Lus10030622 [exp]	8.7	0.8884

Compare expression of checked genes

Lus10019654 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.