Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39780 147 / 1e-43 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G22190 140 / 8e-41 AP2_ERF RAP2.4 related to AP2 4, Integrase-type DNA-binding superfamily protein (.1) AT1G78080 134 / 6e-38 AP2_ERF CAF1, RAP2.4, WIND1 wound induced dedifferentiation 1, related to AP2 4 (.1) AT2G22200 131 / 3e-37 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G65130 124 / 2e-34 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G36060 104 / 1e-26 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G13620 105 / 2e-26 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G64380 92 / 8e-22 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G20880 87 / 6e-20 AP2_ERF AtERF53 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) AT4G28140 80 / 1e-17 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000582 [exp] 321 / 2e-112 AT4G39780 208 / 2e-67 Integrase-type DNA-binding superfamily protein (.1) Lus10022497 [exp] 164 / 4e-49 AT1G78080 248 / 2e-80 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10016801 [exp] 162 / 1e-48 AT1G78080 245 / 3e-79 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10033463 [exp] 127 / 9e-35 AT1G78080 248 / 2e-80 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10020913 [exp] 124 / 1e-33 AT1G78080 246 / 2e-79 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10003889 [exp] 105 / 9e-27 AT1G64380 197 / 4e-61 Integrase-type DNA-binding superfamily protein (.1) Lus10001898 [exp] 104 / 2e-26 AT1G64380 210 / 1e-65 Integrase-type DNA-binding superfamily protein (.1) Lus10007124 [exp] 92 / 5e-22 AT4G13620 181 / 1e-54 Integrase-type DNA-binding superfamily protein (.1) Lus10016669 [exp] 92 / 6e-22 AT4G13620 184 / 2e-55 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G077300 [exp] 151 / 5e-44 AT1G78080 207 / 7e-64 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.007G090600 [exp] 146 / 6e-42 AT1G78080 205 / 4e-63 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.005G168700 [exp] 145 / 6e-42 AT1G78080 197 / 3e-60 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.002G094200 [exp] 144 / 2e-41 AT1G78080 228 / 1e-72 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.017G055400 [exp] 104 / 5e-26 AT4G13620 216 / 9e-66 Integrase-type DNA-binding superfamily protein (.1) Potri.001G092400 [exp] 99 / 2e-24 AT1G64380 181 / 1e-54 Integrase-type DNA-binding superfamily protein (.1) Potri.001G315300 [exp] 98 / 2e-23 AT4G13620 194 / 3e-57 Integrase-type DNA-binding superfamily protein (.1) Potri.003G139300 [exp] 91 / 1e-21 AT1G64380 173 / 1e-51 Integrase-type DNA-binding superfamily protein (.1) Potri.013G135600 [exp] 89 / 3e-20 AT2G20880 180 / 2e-52 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) Potri.019G102200 [exp] 86 / 2e-19 AT2G20880 195 / 2e-58 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10019665 pacid=23139291 polypeptide=Lus10019665 locus=Lus10019665.g ID=Lus10019665.BGIv1.0 annot-version=v1.0 ATGGCTGCAGAACTCATGGAGGCACTTGAACCTTTCATGAAATCTCCTCCTTCTTGTTTCTCCCTAAACCAGCTGAACCCATCTCAAATCCTCCAGATCC AAGCTCAGCTCCAAACCCAGATGACCAATTACAAAAACCCTCTGGCGGTTACTCCTTCCCCGATGAAGCGATCGGTGGCCGCAGTTAAGCCGCCGACGAA GCTTTACAGGGGAGTGAGGCAGCGCCACTGGGGGAAATGGGTAGCTGAAATCCGGCTACCCAAGAACCGAACCAGGCTCTGGCTCGGAACCTTCGAAACC GCCGAGGAAGCCGCTCTCGCTTACGACCGAGCCGCTTACATGCTTCGAGGCGACTTCGCTCGGCTCAACTTCCCGCAGATGGTCCACACCGACGGCGAAT TGATCAGGACCCTCCATTCCTCTGTGGAAGCCAAGCTCCAAGCTATATGCCAGAGCTTGGAAGAGAAGAAGAAAACAGGGGAGGTGGAAAACAGAGCCGC CCCTGTGAAAGTTGAAGATACAGAGATTTCTTCTTCCTCTAGTTCGAATTCGAATTCTAATTCCTCGCCGGAGTCGGAGATTTCGTTCTTTGACTTCACC GAGACGGAATCGAGGTGGGGAATCGGAGAAACTTTCGGGTTGGAGAAGTTTCCTTCTGCAGAGATTGATTGGGCTGCTATCTGA
AA sequence Show only first row Show all	>Lus10019665 pacid=23139291 polypeptide=Lus10019665 locus=Lus10019665.g ID=Lus10019665.BGIv1.0 annot-version=v1.0 MAAELMEALEPFMKSPPSCFSLNQLNPSQILQIQAQLQTQMTNYKNPLAVTPSPMKRSVAAVKPPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFET AEEAALAYDRAAYMLRGDFARLNFPQMVHTDGELIRTLHSSVEAKLQAICQSLEEKKKTGEVENRAAPVKVEDTEISSSSSSNSNSNSSPESEISFFDFT ETESRWGIGETFGLEKFPSAEIDWAAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39780	AP2_ERF		Integrase-type DNA-binding sup...		Lus10019665 [exp]	0	1
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Lus10000411 [exp]	3.3	0.9574
AT4G39780	AP2_ERF		Integrase-type DNA-binding sup...		Lus10000582 [exp]	3.5	0.9553
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10037751 [exp]	5.3	0.9682
AT1G12110		CHL1-1, CHL1, B...	CHLORINA 1, ARABIDOPSIS THALIA...		Lus10024614 [exp]	6.3	0.9574
AT4G31830			unknown protein		Lus10010682 [exp]	6.5	0.9483
AT1G72890			Disease resistance protein (TI...		Lus10019142 [exp]	6.9	0.9519
AT1G14160			Uncharacterised protein family...		Lus10037160 [exp]	7.6	0.9668
AT5G18350			Disease resistance protein (TI...		Lus10018024 [exp]	8.7	0.9431
AT4G17900			PLATZ transcription factor fam...		Lus10004577 [exp]	8.9	0.9597
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10042516 [exp]	9.6	0.9666

Compare expression of checked genes

Lus10019665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.