Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10050 295 / 1e-100 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G65205 290 / 3e-98 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G03330 78 / 2e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G10310 73 / 4e-15 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50600 73 / 1e-14 ATHSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50700 73 / 1e-14 HSD1 hydroxysteroid dehydrogenase 1 (.1) AT3G47360 72 / 2e-14 ATHSD3 hydroxysteroid dehydrogenase 3 (.1) AT5G50690 72 / 3e-14 ATHSD7 hydroxysteroid dehydrogenase 7 (.1) AT5G50590 72 / 3e-14 ATHSD4 hydroxysteroid dehydrogenase 4 (.1) AT3G47350 72 / 3e-14 ATHSD2 hydroxysteroid dehydrogenase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016430 [exp] 496 / 6e-180 AT5G10050 323 / 8e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016429 [exp] 389 / 2e-137 AT5G10050 349 / 1e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019684 [exp] 375 / 4e-132 AT5G10050 355 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004925 [exp] 301 / 6e-103 AT5G10050 410 / 5e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040878 [exp] 211 / 6e-68 AT5G65205 308 / 9e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10011729 [exp] 179 / 5e-55 AT5G65205 240 / 1e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10001511 [exp] 78 / 4e-16 AT5G50600 388 / 5e-135 hydroxysteroid dehydrogenase 1 (.1) Lus10036940 [exp] 76 / 1e-15 AT1G67730 449 / 4e-160 beta-ketoacyl reductase 1 (.1) Lus10026851 [exp] 76 / 1e-15 AT3G03330 439 / 7e-156 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G086600 [exp] 325 / 2e-111 AT5G10050 416 / 2e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G080900 [exp] 299 / 6e-102 AT5G10050 379 / 2e-133 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.007G007300 [exp] 177 / 6e-54 AT5G10050 210 / 6e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G099900 [exp] 79 / 7e-17 AT5G50700 285 / 5e-95 hydroxysteroid dehydrogenase 1 (.1) Potri.012G101900 [exp] 79 / 8e-17 AT5G50690 287 / 9e-97 hydroxysteroid dehydrogenase 7 (.1) Potri.015G100000 [exp] 78 / 2e-16 AT5G50690 298 / 8e-101 hydroxysteroid dehydrogenase 7 (.1) Potri.012G102000 [exp] 74 / 5e-15 AT5G50700 279 / 7e-93 hydroxysteroid dehydrogenase 1 (.1) Potri.008G181700 [exp] 74 / 5e-15 AT1G67730 431 / 8e-153 beta-ketoacyl reductase 1 (.1) Potri.016G048800 [exp] 72 / 2e-14 AT5G50690 284 / 2e-95 hydroxysteroid dehydrogenase 7 (.1) Potri.010G052300 [exp] 71 / 5e-14 AT1G67730 449 / 7e-160 beta-ketoacyl reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10019683 pacid=23139321 polypeptide=Lus10019683 locus=Lus10019683.g ID=Lus10019683.BGIv1.0 annot-version=v1.0 ATGCATTCTGCCGGTGTAGAAATCGTTCTGATCACAGGCTGTTCAGAGGAAGGGATTGGCCACGCACTGGCGGAGCAGTTTGCGGCCACTGGCAAGTGTC TGGTTGTGGCCACAGCCAGGTCGTTGAGCTCAATGAAGGAGCTGGAAAATGACGACCGGTTCTATCTGCAGGAGCTGGACGTCTCGTCTGACGAGAGTGT GGAGAAGGTGGTGGGGAATGTCGTCGAGAAGTTTGAGAGGGTGGATGTTCTGGTTAACAACGCTGGTATCCAGTGCATTGGTCCTCTTGGTGAGGTTTCT CTAGCTGATATGGAGAATACTTTCAACACCAATGTTTATGGTCCGATGAGGATGGTTCAAGTCGTTGTACCGTATATGGCATCTCGAAAGAAGGGGAAGA TTGTGAACGTAGGAAGCTTAGTGGTGCTGGTTCCTTTACCTTGGTGCGGTGCGTATACTGCAACCAAAGCTGCCATCCATTCTTTCTCTAATACCTTGAG GTTGGAACTGAAGCCACTGGGGATCAGCGTGACAAACGTGGCACCAGGGACCATATCAACAAAGATAATGAGCTCAGCTGAAACAAGCTTCAATAACAAG AGCTCTCAGTGGAAGCTCTACAAGCAATTTGAGCCTGCAATGAGAAGAGTTCTCTCCATGGGCAACGATGGCAGTCCTGCAGAGACATTTGCAAAGGCTA CCGTCGATGCCGTACTCGGCAAGAATAACCCTCCGGCTTGGTTCGCCTCCGGCAAGCACTCCGCCATTACTCCGATTCTCGGGCTCCTGCCTCTTCGTGC CAAGGATCTGCTTGTCCTATCTATTCTTGAACCTTGA
AA sequence Show only first row Show all	>Lus10019683 pacid=23139321 polypeptide=Lus10019683 locus=Lus10019683.g ID=Lus10019683.BGIv1.0 annot-version=v1.0 MHSAGVEIVLITGCSEEGIGHALAEQFAATGKCLVVATARSLSSMKELENDDRFYLQELDVSSDESVEKVVGNVVEKFERVDVLVNNAGIQCIGPLGEVS LADMENTFNTNVYGPMRMVQVVVPYMASRKKGKIVNVGSLVVLVPLPWCGAYTATKAAIHSFSNTLRLELKPLGISVTNVAPGTISTKIMSSAETSFNNK SSQWKLYKQFEPAMRRVLSMGNDGSPAETFAKATVDAVLGKNNPPAWFASGKHSAITPILGLLPLRAKDLLVLSILEP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10050			NAD(P)-binding Rossmann-fold s...		Lus10019683 [exp]	0	1
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10031172 [exp]	5.1	0.7857
AT1G03350			BSD domain-containing protein ...		Lus10034015 [exp]	5.7	0.6610
					Lus10003927 [exp]	6.0	0.7250
					Lus10038177 [exp]	8.4	0.6907
AT1G44100		AAP5	amino acid permease 5 (.1)		Lus10042742 [exp]	9.4	0.7711
					Lus10028940 [exp]	12.6	0.7297
AT4G35890			winged-helix DNA-binding trans...		Lus10025952 [exp]	13.0	0.6465
					Lus10033191 [exp]	17.2	0.7230
AT2G28680			RmlC-like cupins superfamily p...		Lus10040867 [exp]	17.6	0.6613
AT4G03170	B3		AP2/B3-like transcriptional fa...		Lus10011114 [exp]	19.2	0.6625

Compare expression of checked genes

Lus10019683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.