Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10050 318 / 2e-109 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G65205 313 / 1e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G03330 69 / 2e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G05260 67 / 1e-12 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50600 67 / 2e-12 ATHSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50700 67 / 2e-12 HSD1 hydroxysteroid dehydrogenase 1 (.1) AT3G47350 63 / 3e-11 ATHSD2 hydroxysteroid dehydrogenase 2 (.1.2) AT1G10310 62 / 3e-11 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G47360 62 / 4e-11 ATHSD3 hydroxysteroid dehydrogenase 3 (.1) AT3G29260 62 / 6e-11 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016429 [exp] 506 / 0 AT5G10050 349 / 1e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016430 [exp] 395 / 4e-140 AT5G10050 323 / 8e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019683 [exp] 385 / 8e-136 AT5G10050 315 / 3e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004925 [exp] 342 / 1e-118 AT5G10050 410 / 5e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040878 [exp] 221 / 1e-71 AT5G65205 308 / 9e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10011729 [exp] 166 / 6e-50 AT5G65205 240 / 1e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10031448 [exp] 70 / 2e-13 AT5G50600 378 / 3e-131 hydroxysteroid dehydrogenase 1 (.1) Lus10001511 [exp] 69 / 6e-13 AT5G50600 388 / 5e-135 hydroxysteroid dehydrogenase 1 (.1) Lus10032556 [exp] 65 / 9e-12 AT5G50600 411 / 4e-144 hydroxysteroid dehydrogenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G086600 [exp] 353 / 9e-123 AT5G10050 416 / 2e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G080900 [exp] 325 / 5e-112 AT5G10050 379 / 2e-133 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.007G007300 [exp] 171 / 1e-51 AT5G10050 210 / 6e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G101900 [exp] 73 / 8e-15 AT5G50690 287 / 9e-97 hydroxysteroid dehydrogenase 7 (.1) Potri.008G149201 [exp] 73 / 9e-15 AT1G54870 378 / 3e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G228533 [exp] 69 / 2e-13 AT1G10310 376 / 1e-133 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G100000 [exp] 67 / 1e-12 AT5G50690 298 / 8e-101 hydroxysteroid dehydrogenase 7 (.1) Potri.015G099900 [exp] 64 / 9e-12 AT5G50700 285 / 5e-95 hydroxysteroid dehydrogenase 1 (.1) Potri.012G102000 [exp] 64 / 1e-11 AT5G50700 279 / 7e-93 hydroxysteroid dehydrogenase 1 (.1) Potri.016G048800 [exp] 63 / 4e-11 AT5G50690 284 / 2e-95 hydroxysteroid dehydrogenase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10019684 pacid=23139223 polypeptide=Lus10019684 locus=Lus10019684.g ID=Lus10019684.BGIv1.0 annot-version=v1.0 ATGGACTCTGTCGGGCTCGAAATCGTCCTGATCACCGGCTGTTCCGAGGGAGGGATCGGCCACGCTCTGGCCAAGCAGTTCGCCGCAACGAATAAGTGCT TGGTCGTGGCGACAAGCCGGTCGTTGGGTTCCATGAAGGATATGGAGGGTGACGACCGGTTCTACCTCCAGGAGCTCGACGTTTCGTCGGAGGAAAGCGT GAATAAGGTGGTGGCGAACGTCGTCGAGAAGTACGGCAGAGTTGACGTTCTGGTCAACAACGCCGGCGTTCAGTGCGTTGGCCCTCTTGCTGAGGTGTCT CTCGACGCTGTGCAGAGTACTTTCAACACCAACGTTTACGGTGCGATGAGGATGGTTCAAGCAGTTGTTCCGCATATGGCCTCGAAGAAGAAGGGCAAAA TCGTAAATGTGGGAAGCATAGTGGTCTTGGCTTGTTTACCTTGGGCCGGTGCCTATGCTGCAACCAAAGCCGCCCTCCACGCTTTAACTGATACACTGAG ATTGGAACTGAAACCACTGGGGATAAACGTGACAAATGTAGCACCAGGGGGAATACGAACCAAAATCATGAGCTCAGCCGAGACCAGCTACAACCAGCGG AACACTGAATGGAAGCTCTACAAGCCGTACGAGCCAGCGATGAGAAGGTTCCTCACCCTAGACAACGACAGCAACACGAGTCCTGTCGAGGATTTCGCAA AGCGTACCGTCGCTGCGATCCTGAAAAAGAACCCTCCGGCGTGGTTCTCCGCCGGCAAATACTCCACCATCTTTGCCTTTGCGTACTACTTGCCACTTCG TGTCAAGGATATGCTCGTCCAATCTTTTCTTAAACCTTGA
AA sequence Show only first row Show all	>Lus10019684 pacid=23139223 polypeptide=Lus10019684 locus=Lus10019684.g ID=Lus10019684.BGIv1.0 annot-version=v1.0 MDSVGLEIVLITGCSEGGIGHALAKQFAATNKCLVVATSRSLGSMKDMEGDDRFYLQELDVSSEESVNKVVANVVEKYGRVDVLVNNAGVQCVGPLAEVS LDAVQSTFNTNVYGAMRMVQAVVPHMASKKKGKIVNVGSIVVLACLPWAGAYAATKAALHALTDTLRLELKPLGINVTNVAPGGIRTKIMSSAETSYNQR NTEWKLYKPYEPAMRRFLTLDNDSNTSPVEDFAKRTVAAILKKNPPAWFSAGKYSTIFAFAYYLPLRVKDMLVQSFLKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10050			NAD(P)-binding Rossmann-fold s...		Lus10019684 [exp]	0	1
AT2G41480			Peroxidase superfamily protein...		Lus10020826 [exp]	9.3	0.8644
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10019728 [exp]	9.5	0.8370
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10016392 [exp]	24.9	0.7967
AT1G28590			GDSL-like Lipase/Acylhydrolase...		Lus10000523 [exp]	32.1	0.8222
AT3G57240		BG3	"beta-1,3-glucanase 3", beta-1...		Lus10002807 [exp]	34.3	0.7232
AT2G19130			S-locus lectin protein kinase ...		Lus10024343 [exp]	45.3	0.7369
AT2G36780			UDP-Glycosyltransferase superf...		Lus10027739 [exp]	58.9	0.7929
AT2G36080	B3	ABS2, NGAL1	AP2/B3-like transcriptional fa...		Lus10029431 [exp]	70.4	0.7166
AT1G71910			unknown protein		Lus10016934 [exp]	79.6	0.7968
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10004906 [exp]	85.6	0.7948

Compare expression of checked genes

Lus10019684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.