Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23340 85 / 2e-19 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT1G70550 83 / 9e-19 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT5G18460 82 / 2e-18 Protein of Unknown Function (DUF239) (.1) AT1G10750 79 / 2e-17 Protein of Unknown Function (DUF239) (.1) AT5G50150 79 / 3e-17 Protein of Unknown Function (DUF239) (.1) AT2G44220 77 / 8e-17 Protein of Unknown Function (DUF239) (.1) AT3G13510 76 / 2e-16 Protein of Unknown Function (DUF239) (.1) AT2G44210 74 / 2e-15 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT1G55360 72 / 5e-15 Protein of Unknown Function (DUF239) (.1) AT2G44250 72 / 9e-15 Protein of Unknown Function (DUF239) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020297 [exp] 109 / 9e-28 AT3G03560 489 / 3e-164 unknown protein Lus10006863 [exp] 100 / 3e-25 AT2G44220 246 / 5e-78 Protein of Unknown Function (DUF239) (.1) Lus10006858 [exp] 99 / 7e-25 AT2G44220 256 / 3e-82 Protein of Unknown Function (DUF239) (.1) Lus10006860 [exp] 92 / 2e-22 AT5G18460 199 / 9e-61 Protein of Unknown Function (DUF239) (.1) Lus10036985 [exp] 92 / 7e-22 AT2G44220 218 / 7e-65 Protein of Unknown Function (DUF239) (.1) Lus10006862 [exp] 91 / 2e-21 AT2G44220 265 / 1e-85 Protein of Unknown Function (DUF239) (.1) Lus10006861 [exp] 91 / 2e-21 AT5G18460 272 / 8e-88 Protein of Unknown Function (DUF239) (.1) Lus10006859 [exp] 90 / 3e-21 AT2G44220 266 / 1e-85 Protein of Unknown Function (DUF239) (.1) Lus10036998 [exp] 89 / 1e-20 AT2G44220 247 / 9e-77 Protein of Unknown Function (DUF239) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G024100 [exp] 84 / 3e-19 AT5G18460 622 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.013G050100 [exp] 81 / 4e-18 AT5G18460 635 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.010G044300 [exp] 81 / 9e-18 AT1G70550 664 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.008G188000 [exp] 78 / 5e-17 AT1G70550 661 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.015G080300 [exp] 73 / 3e-15 AT5G50150 637 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.003G221200 [exp] 72 / 5e-15 AT1G55360 716 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G003800 [exp] 72 / 8e-15 AT1G55360 689 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G233000 [exp] 71 / 2e-14 AT3G13510 621 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.012G088300 [exp] 70 / 3e-14 AT5G50150 592 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.006G233700 [exp] 40 / 0.0008 AT5G25950 333 / 1e-111 Protein of Unknown Function (DUF239) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03080 [flax] [poplar] Neprosin Neprosin
Representative CDS sequence Show only first row Show all	>Lus10019705 pacid=23139251 polypeptide=Lus10019705 locus=Lus10019705.g ID=Lus10019705.BGIv1.0 annot-version=v1.0 ATGAACCAAATCTGGGAAAAGAATGGAACATATTGTCCTCAAGGGACGATCCCAATTGCAAGACATCAATCGACTTTTCCTCCTAAAAGGAAATCTACTA CTGAAACTCAGGCAATCGACGGCTACTTTCATGAGTGGGAATTGGTGGCTAAGCATAAAGGCGAAGACATAGGATACTGGCCAGTCGAAATCTTCACAAA TAGTGGCCTTTCAAAGAGCTCTACACAGATCAACTATGGAGGGGAGATTATAGACACAAGGCCAGAAGGAGTTCACACGCAGACGAACATGGGAAGTGGA CATTTTGCCAGTGAAGGATGGAGCAAAGCAGCCTTCGTTCGAAACATCGGATATGTCGACGAGGATGGTGTTCTGAAAGATGCTCGTGACATGATTTGTG GTGTGGCCACTAGGCCTGAATGTTACAGTGTTGTTGTTGAAGATTGCGACGATTTTAAGGTGTTGGGTTCGAATCCAGTTGCACCTCATATATGGACACC GATGATATATTTATTCCCTTCATTTTTTTTTGTAACTATATGTTTGTCATGTCTATCTCCGGCTATATAA
AA sequence Show only first row Show all	>Lus10019705 pacid=23139251 polypeptide=Lus10019705 locus=Lus10019705.g ID=Lus10019705.BGIv1.0 annot-version=v1.0 MNQIWEKNGTYCPQGTIPIARHQSTFPPKRKSTTETQAIDGYFHEWELVAKHKGEDIGYWPVEIFTNSGLSKSSTQINYGGEIIDTRPEGVHTQTNMGSG HFASEGWSKAAFVRNIGYVDEDGVLKDARDMICGVATRPECYSVVVEDCDDFKVLGSNPVAPHIWTPMIYLFPSFFFVTICLSCLSPAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23340			Protein of Unknown Function (D...		Lus10019705 [exp]	0	1
AT5G22450			unknown protein		Lus10000530 [exp]	5.2	1.0000
					Lus10011642 [exp]	5.7	1.0000
					Lus10022214 [exp]	6.3	1.0000
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10003908 [exp]	7.3	1.0000
					Lus10027991 [exp]	8.5	1.0000
					Lus10011078 [exp]	8.8	1.0000
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10013028 [exp]	8.9	1.0000
					Lus10035592 [exp]	12.0	1.0000
AT2G20420			ATP citrate lyase (ACL) family...		Lus10022902 [exp]	13.0	1.0000
					Lus10027689 [exp]	14.1	1.0000

Compare expression of checked genes

Lus10019705 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.