Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08500 169 / 3e-50 MYB ATMYB83 myb domain protein 83 (.1) AT5G12870 165 / 2e-49 MYB ATMYB46 myb domain protein 46 (.1) AT1G57560 154 / 4e-45 MYB ATMYB50 myb domain protein 50 (.1) AT3G13890 155 / 7e-45 MYB ATMYB26, MS35 MALE STERILE 35, myb domain protein 26 (.1.2) AT5G26660 154 / 2e-44 MYB ATMYB4, ATMYB86 myb domain protein 86 (.1) AT4G01680 150 / 2e-44 MYB ATMYB55 myb domain protein 55 (.1.2.3) AT1G09540 153 / 4e-44 MYB AtMYB61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) AT1G63910 151 / 3e-43 MYB AtMYB103 myb domain protein 103 (.1) AT3G12720 139 / 4e-39 MYB ATMYB67, AtY53 myb domain protein 67 (.1) AT2G16720 136 / 1e-38 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016413 [exp] 330 / 3e-114 AT3G08500 187 / 2e-57 myb domain protein 83 (.1) Lus10031281 [exp] 178 / 8e-54 AT3G08500 228 / 1e-72 myb domain protein 83 (.1) Lus10029520 [exp] 176 / 1e-52 AT5G12870 220 / 2e-69 myb domain protein 46 (.1) Lus10039610 [exp] 176 / 1e-52 AT5G12870 219 / 3e-69 myb domain protein 46 (.1) Lus10031850 [exp] 173 / 8e-52 AT3G08500 224 / 1e-70 myb domain protein 83 (.1) Lus10027369 [exp] 171 / 1e-50 AT5G12870 218 / 5e-69 myb domain protein 46 (.1) Lus10002559 [exp] 170 / 2e-50 AT5G12870 225 / 7e-72 myb domain protein 46 (.1) Lus10015608 [exp] 154 / 5e-44 AT3G13890 249 / 8e-80 MALE STERILE 35, myb domain protein 26 (.1.2) Lus10038022 [exp] 150 / 3e-42 AT4G01680 273 / 8e-90 myb domain protein 55 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G267300 [exp] 177 / 9e-54 AT3G08500 266 / 1e-87 myb domain protein 83 (.1) Potri.009G061500 [exp] 176 / 4e-53 AT3G08500 224 / 6e-71 myb domain protein 83 (.1) Potri.009G053900 [exp] 171 / 2e-51 AT5G12870 224 / 8e-72 myb domain protein 46 (.1) Potri.001G258700 [exp] 171 / 2e-51 AT5G12870 219 / 4e-70 myb domain protein 46 (.1) Potri.001G197000 [exp] 156 / 3e-45 AT3G13890 256 / 1e-82 MALE STERILE 35, myb domain protein 26 (.1.2) Potri.013G001000 [exp] 157 / 7e-45 AT1G09540 382 / 1e-130 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.012G084100 [exp] 151 / 2e-43 AT5G26660 253 / 1e-81 myb domain protein 86 (.1) Potri.015G082700 [exp] 151 / 3e-43 AT1G57560 254 / 2e-82 myb domain protein 50 (.1) Potri.003G132000 [exp] 150 / 3e-43 AT1G63910 317 / 2e-107 myb domain protein 103 (.1) Potri.001G099800 [exp] 149 / 4e-43 AT1G63910 319 / 3e-108 myb domain protein 103 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10019707 pacid=23139215 polypeptide=Lus10019707 locus=Lus10019707.g ID=Lus10019707.BGIv1.0 annot-version=v1.0 ATGAGCAATAATGACAGCAACACCATAAGTAGTAAGTTGAGGAGAGGACTGTGGTCGGCGGCGGAAGATGAGAAGCTGAAGAAGTACATGTCGTCGAACA CGGGGAGGCGGTTAGGTTGTTGGGGTGAGATAGCTAGGAATGCTGGCCTCCAAAGATGCGGGAAGAGCTGTCGCCTTCGATGGATCAACTACTTGCGGCC TGATCTCAAGCGTGGCCCTTTCTCCCCTTATGAGCAATATCTCATCCTCCACCTCCATTCCCTTCTCGGCAACAGGTGGTCTCAAATTGCAGCTAGGCTA TCAGGAAGAACAGACAATGAAATAAAGAACTTCTGGAACTCAACCCTCAAGAGACGAATGAAGATGACCATGATGCCAACGACCACGACAACTAATTACA ACGAAGGAAGCACCTCAGCCGCTACCGGTGGTTCTTCCATATCCACTTCACTTGAACACCACCACCATCACGACGCCATACTGATGGAAGGACAATGTAT TAATAATGACGTCAACATCCCACTACTCAACGATCATCAACAAGGTGTTATGATGTCATCAAATCATCATGCTGTCTCGTCGGAAGTAGGGTGTAGTGGG TTCGAATTCGCCGCAGCCAGTACAATTACTACAAATACTGCATCATCCTTTGGGTTTCATCAGCTTAATGGCTACATTGATCATCATGATGACCCTTTAG TGGTTGCAAGTGTTCTGGACGGTGGTGATGATGGCGGTCAGATAATATTGTCGTCTGGGGGAGAAGATGATCATAGTAAAAATAATAATAGTATTGTTAA TTATGATCACTACTGTAACTGGGATATTATGGAGGATTTGTTCATATGA
AA sequence Show only first row Show all	>Lus10019707 pacid=23139215 polypeptide=Lus10019707 locus=Lus10019707.g ID=Lus10019707.BGIv1.0 annot-version=v1.0 MSNNDSNTISSKLRRGLWSAAEDEKLKKYMSSNTGRRLGCWGEIARNAGLQRCGKSCRLRWINYLRPDLKRGPFSPYEQYLILHLHSLLGNRWSQIAARL SGRTDNEIKNFWNSTLKRRMKMTMMPTTTTTNYNEGSTSAATGGSSISTSLEHHHHHDAILMEGQCINNDVNIPLLNDHQQGVMMSSNHHAVSSEVGCSG FEFAAASTITTNTASSFGFHQLNGYIDHHDDPLVVASVLDGGDDGGQIILSSGGEDDHSKNNNSIVNYDHYCNWDIMEDLFI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10019707 [exp]	0	1
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10016413 [exp]	1.0	0.9418
AT5G51490			Plant invertase/pectin methyle...		Lus10031720 [exp]	3.2	0.9277
AT4G30040			Eukaryotic aspartyl protease f...		Lus10004064 [exp]	6.6	0.8800
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10025678 [exp]	12.7	0.9102
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10031281 [exp]	14.5	0.9209
AT5G46220			Protein of unknown function (D...		Lus10023312 [exp]	15.1	0.9171
					Lus10005454 [exp]	17.0	0.8865
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Lus10002559 [exp]	17.2	0.9123
AT1G56430		ATNAS4	ARABIDOPSIS THALIANA NICOTIANA...		Lus10031416 [exp]	25.4	0.8890
AT1G79620			Leucine-rich repeat protein ki...		Lus10021003 [exp]	26.5	0.9117

Compare expression of checked genes

Lus10019707 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.