Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 463 / 7e-139 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G12010 427 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 405 / 5e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G36930 407 / 5e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G41750 379 / 4e-111 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT4G19510 375 / 1e-109 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G17880 376 / 6e-109 CSA1 constitutive shade-avoidance1, disease resistance protein (TIR-NBS-LRR class) (.1) AT1G63870 372 / 8e-109 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G16870 371 / 7e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G49140 362 / 9e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030839 [exp] 1073 / 0 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10016411 [exp] 534 / 2e-177 AT5G12840 140 / 1e-39 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) Lus10029722 [exp] 484 / 2e-148 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 485 / 5e-147 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10018616 [exp] 422 / 4e-124 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10003749 [exp] 419 / 3e-123 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10039850 [exp] 416 / 1e-122 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10005588 [exp] 414 / 2e-122 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10011104 [exp] 412 / 2e-121 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G069200 [exp] 541 / 2e-168 AT5G17680 590 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G104301 [exp] 530 / 2e-162 AT5G17680 566 / 1e-178 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 524 / 3e-161 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 515 / 2e-156 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G097300 [exp] 513 / 2e-156 AT5G17680 598 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G105201 [exp] 504 / 7e-154 AT4G12010 549 / 4e-174 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.017G104901 [exp] 499 / 3e-151 AT5G17680 536 / 2e-167 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G103701 [exp] 499 / 9e-151 AT5G17680 544 / 5e-170 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070300 [exp] 479 / 6e-149 AT5G17680 558 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G098550 [exp] 490 / 2e-148 AT5G17680 593 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF07725 [flax] [poplar] LRR_3 Leucine Rich Repeat CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain CL0023 [flax] [poplar] PF02045 [flax] [poplar] CBFB_NFYA CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
Representative CDS sequence Show only first row Show all	>Lus10019708 pacid=23139224 polypeptide=Lus10019708 locus=Lus10019708.g ID=Lus10019708.BGIv1.0 annot-version=v1.0 ATGACCGATTCTGTACTCCCTCCTTCTACCTTCCGGCTCCTCATGCCTTCTAATCAAAGTCAGACAGAGGAGGTCGACGATTTTACCTCATTCACAGACT CCCCCTCATCATTCCATTCGGCGTCATCTAATTTCACCACCGCCGACGATGATTCCTCCTGCCCCGATGGAGTAGCTTCCTCCTCCTTCTCCCCCCACTT CGATACAGTGTGTCCCAATTTGACCATCTGCGAAGGATCTTCTTCATCGTCTTCCTCTTCATTCGCTACCGCCGACGATGATTCCTCCTGCTCCGATGGA GTAGCTTCCTCCTCCTTCTCCCCCCACTTCGATACAGTGTGTCCCAATTTGACCATCTGCAAAGAATCTTCTTCATCGTCTTCCTCTTCATTCGCTACCG CCGCCGCCCCGCCGTCATCGTCGTCGTCTAATTGTTACGAAGTTTTCCTGAGTTTCAGAGGAACCGACACTAGGCACAGCTTCGTCAGTCATCTGTACAG TGCTCTCACGCAGAAAGGGATTAAGACTTTCAAGGACGATAAGGATCTGGAACGCGGAAAGCAAATCGAACGGGAGATTCTCGGTGCAATCCGGCAATCA AGGCTCTCCATAGTCGTTTTCTCGAAAGACTATGCTTCCTCCTCTTGGTGTTTGGATGAACTCCAAACAATCGTCGATTTCTGTGCGCGGAAGGACACGG ATGAGGATATTGAGAAGATTCCTCACGATCTTATCCCAATTTTCTACGGCGTGAATCCGGACGACGTTAGCAATGTCGACGACAACAGTTGTTATGCAGA GTCGTTTGCCAAACACCAGAAGTTTTTCCCTGATCGTAAGCTCCGAAAGTGGAAGGTTGCTCTCAAGACGGCCGCAGAATCAAGCGGATGGGACTCTAAC AACAAGGATGAAAAGGTTCTTATTGATGAGATAGTGGCTCTTGTTAGTAAGAAATTGGTTCGTCATGATCAAGTCTCAAACAAGTCCTCCGCAGACCTTG TTGGAATGGAACTCCGGATAAAGGAAATGGAGAGTCGACTGAGTATTGGTTTGGTTGATGTTCGTATGGTGGGAATATGGGGGATGCCTGGGATTGGTAA AACAACTATTGCTCAAGCTGTATATGACCATATCAACCATAAATTTGATGCATGTTGCTTCCTTAGGAATATTAGAGAGGCTGCGGAGAAAGCTGCAGGA TTGAACTATTTGCGAAAGGAACTCGTTTCTGCTTTGATGGGGGGAGATGGCTTGGGGATCGTGGATGATCACAACTTGGATAAGCTAATGGAGCGAAGAT TTTGCGATAGATGTCTCCTCATTGTTCTTGACGATGTGTCTCATGTCGATCAATTGGCGAGCTTAGTAGGGCATCATGAGTGGTTCGGATCAGGGAGTAG AATCATCGTAACAACTCACAATAAGCAAGTGATTGAACAATATGTGGACGACATCTATGAGGCCAAGCCTTTAAGTGATGATGAATCCCGTCATCTGTTT CGCCAACATGCGTTTGGCAAGAATGTAAGTGATTGCCAAGGTTTCATGTTAGAGTTCTCACAGCGGGTTGTCGGTTATTGCCAGGGGATTCCTTTGGCTC TCAAAGTGTTGGGAGGCTCTTTATTCAACATGAATAGGAGTGAATGGGAAAGCAGATTGAAAACGTTGGAAGAAGTTCCTCCAGAGAACATAATGAATAG CCTTACACAACAGTGCTTTGATGTGCTTCAAAGATCTGAGAAGAGAATATTTCTTGACATTGCGTGCTTCTTTAAAGGAGACAATGAAGATTATGTCGTG AGCATACTAGAAGACCGGGGTTGCCCCGCACGTCATGGTTTAGAAGTCCTCCGTCGGAGATGTCTCATAAGTAGCCGGGAGGATAACACTAACGAGGTCT GGATGCATGATTTGATGCAGCAGATGGGTCGACAAGTTGTCCGGCAACAGTCTAGTGCTTATGTAGGCAGCAGATTGTGGTTGGCTGAAGAGATTTGCCA ACTCTGGGCCCAAAATATGGGGACACACAAAGTTGAAGCAATCATCCTTGATATCTCTGCAGCAAAGATTGCGCTCCCTCTTGGTCTTGAAGCTTTCCGC TTGATGAGCCAACTCAGATTGCTTAAGATCTGCTCTACTACTCAGCAGTCTGGAAGTCGTGAGTACTTGGTCAGAAAAGAAGCATGCCCGGATACGTATG ATGAATGCATATCAGAGAATCGCGACAGGTTACCAGAGGGATGTAAGTTGCGTTTCTCAGGCAAGTTGATTTCCCTTTCAGATGAGCTGAGGGTTCTTCA TTGGTATGAGTTTCCATTGAAGTCTTTACCTGCAAACTTCTATCCCTGCAATTTGGTTGAACTTAACCTCTCTTACAATCGCTTGAAGAATCTTTGGACA GGAGAGAAGGTTTTTGACAATTTGAAGTTCATGAAACTCAGCTACTCTCAGGAACTCACCCAGACACCAGATTTCCGGGGGACTAAAAACCTTGAGATTC TAATCCTGGAAGGATGTACAAAACTAATTCAGGTCCATCCATCTGTTGGCTCTCTGGAGAAACTCACTTGTTTAAACCTGAAAGACTGTAAAAGGCTCCA GAATCTGCCTAAAAGTATGGGGATGGCATCTCTCGAGATTCTTATATTGTCAGGATGTTCCAAACTGAAATGGTTACCGGATATGGAGCAAAATATGGGG AACTTGAAAGAGCTTCTTCTGGATAGCACAGGTATATCACGGATACCCGCATCCGTTGCAAATCTCACAGGCCTAGTTGAGTTGAGCGTCACAAATTGTA AGCGCTTACAGTTTTTCCCAAAGGCTGTTGGCCGTTGCCTTTCCTTGAAAATTCTTCGCCTCACTGGGTGTTCAGAGCTTCGATTACTGCACTTTGACTT GGATTGTCTCGAAAATTTGGAGGAGCTTTATGCTGACGGAACACGCCTTGGGTTAAGGTTTATGATGGTCAATCCCAGAAGCGACAGGGGACTGTGGAAG CTTAAAAAACTGTCATTTAAAGGGTGTGAAAGGTCTCCCTTTTCCCTTCCAGATTTTTTCCGGGACCATATGTCTCAATCTGAACCAGCACGCAAGACCT TACAGAACTTTTTCTGGGTTGGTAATTACGATCGGTTCTGCGGAGCAGCAAAGTTGTCTAGCCTAACATCGCTGGACCTCAGGGACTCCAACTTGAAGGA GCTCCCTTTTGAACTCAAAGGTCTTGCCTTTCTCACCGACTTGGACTTGAGCGGGAATCCCATTGTTGGACTGAGTGAGCTTCCAGGAAAACTCAAGATC CTTGGTTTGACAAATTGCTGTAATCTTTTGTCACTGCCAAGCCTACCTTCCACAACATACAGTCTGGAGGCTCCAAACTGCAAATCCTTGAGCAAAGTAT ATTCGCCGCAATGCATCGAACCGGGGAAAAAACGGGGGCTTAACTTCATGAATTGCGCCCAATTGGGAGACGATGAAGTGCCTGCATTGCTGCACAGTCA CGTCATACAAACTTCTTTGCACTGTGTTGACCGGATGTCGATCATAGCTCCAAGATGCCGAATGCCTTCACAATGGCTTCTTCAAAACGGCCATGCGCCA ATTGAAGAACGTACTGATAGGGCATTCCTTTTGCTGTATCCCAGTGAGCATAGTTACACTACTGTACGAGGCCTCGTTGTATGGGCTACTTTCAAGGTCT CGGACTCTCGTTGTCGGGCGAAAGCTTGTCTGAGGTTCGACATGAGTTGCGACGGAAAGAAAGTGGAATCTGATGAAATTATACTGAACGAAGGCACAGG GTGTGATTCGGATCAGCTGTGGCTGTCTTACATACCGCCTTTTGGAGCGAAGAATACAAAGATTGGTGGTGGCTGTGTTTTGGATAAGCAACATCATATA GATCAATCTGCTCAAACTCTACTGAACTCCACAATCTACTCCCAACCTTGGTGGAGAGGGATTGGAAACAACAATTCCACCTTTGAGGAAAGTAGGCCAA AGTCGAATGCTTCGCCGTCATCAGTGGAACACTTGAAAGTTTCTGATGCAAATGAAGCTATGCAGCGGTCGGATGGCTTAGACAATGGAGTTAGCTTCAA CAAAGATATACAGACTACTGTATCATCACAACTAGCTGCGAGTGTCTTTTCTCGAACAGATGGAAGTGGTGGGACTGCGAAAGAGGTTCCACAATCGACG CAAATTAGTGCTATGGGCGGACATCCCGAGCATAATTCGCAAATGAAACTTGTCGGTCACTCTATTGTGAGCGTTCTCTCTTTCTGTGGCCTTATATGGA TCCTTCACTTGGATTATGCTCTGGCATCGTATCCATATTCTGATCCTCAATTCGGTGGAATGATGGCTACGTTTGGCCCGCAAGCTATGCATGCTAGAAT GCCTTTGCCCCTTGAAATGGAAGAGGAGCCTGTTTATGTTAATGCGAAGCAGTTTCATGGTATCTTGCGCCGTAGGCAAGCGCGTGCCAAGGCTGAACTC GAAAAGAAAGTGCAAAAACCTAGGAAGCCATATCTTCACGAGTCTCGCCACCAGCATGCCATGAAGAGGGCAAGAGGCGGTGGTGGTCGTTTCCTTAGCT CGAAGAAGCAGGAGGGCCATTCCATGAATCCAGATGCTGCTGCCAAGACTGCAAAGCAATCCGGAGGAAAGCTCCCAGCCCCCAACTGGTTCCCCACGAA CCATACCGGAGATTTTCATTCATATCATCACTCGTCGCCAGCTGACGGAATCAATGGAGGAGGAGGCAGACATGGGAATGCGGTGTCGAATACCGCTTAA
AA sequence Show only first row Show all	>Lus10019708 pacid=23139224 polypeptide=Lus10019708 locus=Lus10019708.g ID=Lus10019708.BGIv1.0 annot-version=v1.0 MTDSVLPPSTFRLLMPSNQSQTEEVDDFTSFTDSPSSFHSASSNFTTADDDSSCPDGVASSSFSPHFDTVCPNLTICEGSSSSSSSSFATADDDSSCSDG VASSSFSPHFDTVCPNLTICKESSSSSSSSFATAAAPPSSSSSNCYEVFLSFRGTDTRHSFVSHLYSALTQKGIKTFKDDKDLERGKQIEREILGAIRQS RLSIVVFSKDYASSSWCLDELQTIVDFCARKDTDEDIEKIPHDLIPIFYGVNPDDVSNVDDNSCYAESFAKHQKFFPDRKLRKWKVALKTAAESSGWDSN NKDEKVLIDEIVALVSKKLVRHDQVSNKSSADLVGMELRIKEMESRLSIGLVDVRMVGIWGMPGIGKTTIAQAVYDHINHKFDACCFLRNIREAAEKAAG LNYLRKELVSALMGGDGLGIVDDHNLDKLMERRFCDRCLLIVLDDVSHVDQLASLVGHHEWFGSGSRIIVTTHNKQVIEQYVDDIYEAKPLSDDESRHLF RQHAFGKNVSDCQGFMLEFSQRVVGYCQGIPLALKVLGGSLFNMNRSEWESRLKTLEEVPPENIMNSLTQQCFDVLQRSEKRIFLDIACFFKGDNEDYVV SILEDRGCPARHGLEVLRRRCLISSREDNTNEVWMHDLMQQMGRQVVRQQSSAYVGSRLWLAEEICQLWAQNMGTHKVEAIILDISAAKIALPLGLEAFR LMSQLRLLKICSTTQQSGSREYLVRKEACPDTYDECISENRDRLPEGCKLRFSGKLISLSDELRVLHWYEFPLKSLPANFYPCNLVELNLSYNRLKNLWT GEKVFDNLKFMKLSYSQELTQTPDFRGTKNLEILILEGCTKLIQVHPSVGSLEKLTCLNLKDCKRLQNLPKSMGMASLEILILSGCSKLKWLPDMEQNMG NLKELLLDSTGISRIPASVANLTGLVELSVTNCKRLQFFPKAVGRCLSLKILRLTGCSELRLLHFDLDCLENLEELYADGTRLGLRFMMVNPRSDRGLWK LKKLSFKGCERSPFSLPDFFRDHMSQSEPARKTLQNFFWVGNYDRFCGAAKLSSLTSLDLRDSNLKELPFELKGLAFLTDLDLSGNPIVGLSELPGKLKI LGLTNCCNLLSLPSLPSTTYSLEAPNCKSLSKVYSPQCIEPGKKRGLNFMNCAQLGDDEVPALLHSHVIQTSLHCVDRMSIIAPRCRMPSQWLLQNGHAP IEERTDRAFLLLYPSEHSYTTVRGLVVWATFKVSDSRCRAKACLRFDMSCDGKKVESDEIILNEGTGCDSDQLWLSYIPPFGAKNTKIGGGCVLDKQHHI DQSAQTLLNSTIYSQPWWRGIGNNNSTFEESRPKSNASPSSVEHLKVSDANEAMQRSDGLDNGVSFNKDIQTTVSSQLAASVFSRTDGSGGTAKEVPQST QISAMGGHPEHNSQMKLVGHSIVSVLSFCGLIWILHLDYALASYPYSDPQFGGMMATFGPQAMHARMPLPLEMEEEPVYVNAKQFHGILRRRQARAKAEL EKKVQKPRKPYLHESRHQHAMKRARGGGGRFLSSKKQEGHSMNPDAAAKTAKQSGGKLPAPNWFPTNHTGDFHSYHHSSPADGINGGGGRHGNAVSNTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17680			disease resistance protein (TI...		Lus10019708 [exp]	0	1
AT2G27950			Ring/U-Box superfamily protein...		Lus10021403 [exp]	2.8	0.8935
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10033840 [exp]	4.2	0.8719
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10032887 [exp]	7.9	0.8547
AT1G67850			Protein of unknown function (D...		Lus10011414 [exp]	9.2	0.8102
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10039833 [exp]	9.4	0.8650
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Lus10041917 [exp]	9.4	0.8487
AT4G29080	AUX_IAA	IAA27, PAP2	indole-3-acetic acid inducible...		Lus10012984 [exp]	10.2	0.8669
AT1G27200			Domain of unknown function (DU...		Lus10030815 [exp]	10.2	0.8628
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10014427 [exp]	12.2	0.8564
AT1G69560	MYB	LOF2, ATMYB105	LATERAL ORGAN FUSION 2, myb do...		Lus10018936 [exp]	14.4	0.8483

Compare expression of checked genes

Lus10019708 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.