Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50420 529 / 0 GRAS SCL-3, SCL3 scarecrow-like 3 (.1) AT1G66350 221 / 3e-66 GRAS RGL1 RGA-like 1 (.1) AT3G03450 209 / 4e-61 GRAS RGL2 RGA-like 2 (.1) AT1G14920 208 / 4e-61 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT2G04890 202 / 4e-60 GRAS SCL21 SCARECROW-like 21 (.1) AT5G48150 204 / 9e-60 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G50600 202 / 4e-58 GRAS SCL5 scarecrow-like 5 (.1) AT5G17490 199 / 9e-58 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G63100 193 / 2e-54 GRAS GRAS family transcription factor (.1) AT3G54220 187 / 2e-52 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024177 [exp] 744 / 0 AT1G50420 582 / 0.0 scarecrow-like 3 (.1) Lus10039562 [exp] 738 / 0 AT1G50420 579 / 0.0 scarecrow-like 3 (.1) Lus10009717 [exp] 526 / 0 AT1G50420 614 / 0.0 scarecrow-like 3 (.1) Lus10022418 [exp] 514 / 0 AT1G50420 592 / 0.0 scarecrow-like 3 (.1) Lus10034374 [exp] 288 / 1e-92 AT1G50420 279 / 2e-89 scarecrow-like 3 (.1) Lus10005078 [exp] 280 / 7e-90 AT1G50420 273 / 3e-87 scarecrow-like 3 (.1) Lus10016596 [exp] 223 / 2e-66 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10006322 [exp] 218 / 1e-64 AT1G63100 588 / 0.0 GRAS family transcription factor (.1) Lus10029592 [exp] 214 / 4e-62 AT1G63100 669 / 0.0 GRAS family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G023500 [exp] 629 / 0 AT1G50420 600 / 0.0 scarecrow-like 3 (.1) Potri.003G202100 [exp] 625 / 0 AT1G50420 568 / 0.0 scarecrow-like 3 (.1) Potri.009G048700 [exp] 543 / 0 AT1G50420 682 / 0.0 scarecrow-like 3 (.1) Potri.004G208700 [exp] 312 / 3e-102 AT1G50420 303 / 7e-99 scarecrow-like 3 (.1) Potri.010G110700 [exp] 228 / 8e-68 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.008G131700 [exp] 226 / 4e-67 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 216 / 2e-63 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.003G122400 [exp] 216 / 9e-63 AT1G63100 696 / 0.0 GRAS family transcription factor (.1) Potri.001G109400 [exp] 213 / 1e-61 AT1G63100 711 / 0.0 GRAS family transcription factor (.1) Potri.001G361700 [exp] 210 / 1e-61 AT1G50600 637 / 0.0 scarecrow-like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10019773 pacid=23139277 polypeptide=Lus10019773 locus=Lus10019773.g ID=Lus10019773.BGIv1.0 annot-version=v1.0 ATGGCAGGCAACGTTCAAGAAGACAAATCTACAATCAGTTCTTCTTCATCTCCCCTCCAGTTATTCCCCTGGATGTCACTGTCTCCAGCAGGAGCAGGAT CACCATTCCTATCATGGGACTTGCAACCGGAAGAGAGGGGACTGTGCCTCATTCAGCTCCTTCGAACTTGTGCCAACCATGTAGCTTCCGGAAGCATCGA AAATGCCAACATCAGCCTCGGCCACATCTCCAACCTTGCGTCTCCCAATGGCGATACTATGCAGAGAATCGCTGCTTACTTCACCGAAGCGCTTGCTGAC CGGATCATGCTTAAAACCTGGCCTGGTCTACATAAGGCTCTTAATTCCACAAGAACAACATGTTCATCAGCAGCCTCTGAGGAAATGCTTGTTCAGAAGT TGTTCTTTGAGCTTTGCCCCTTCTTGAAGTTGTCATATGTGATAACTAACCAGGCTATTGTGGAAGCTATGGAAGGGGAGAAAATGATACACATTGTTGA CTTGAACTCGTTCGAGCCTGCTCAGTGGATCGAGCTCCTTCGTACCCTTAGTGCACGTCCTGAAGGTCCCCCACATTTGAGAATCACAGGCATTCATGAA CATAAGGAGGTGTTGGACCGAATGGGAGCTCGGTTAGTCGAGGAAGCTGAAAAGCTCGACATCCCATTTCAGTTCAACTCCATACCGGGCAAGCTCGAGA ATCTAGATCTTGAATGCTTGCGTGTCAAGACAGGAGAAGCTCTTGCAGTCAGTTCTGTTCTTCAGTTACATTCTCTTCTGGCAACAGACGAGCAAGAAGT GGTTGCAAGAGGGTTGCCTTCAGCTGCAAGGAACCATGTCCAAAAGTTTATGCAGACAAATCGAAGCCAGAAGACCCTAAGCGAATGGCTCGAGAATGAT TCGAGTCCTGACTCAGCACTGTCCCCTTTATCATCATCGTCCATGGCTCCTTCACCGACCATGGGGACCTTCCTGAGCTCACTATGCGCCCTTTCGCCTA AGATCATGGTGATAACCGAGCAGGAATCGGACCATAACAGCCATTCCTTAACGGAGAGGGTGGCCGAAGCTATGAACTTCTACGCAGCGCTCTTTGATTG CTTGGAGTCGTCTGCTGATCATCCTAGAGCCTTGTTGGAGAGGCAGAAAGTGGAGAAGATGTTGTTTGGGAAGGAGATCAAGAACATCATTGCCTGCGAA GGGATCGAACGAAAGGAGAGACACGAGAAGTTGGAGAAGTGGATTCTACGAGTCGAGTTAGCCGGGTTTGGGAGGGTTCCTCTTAGTTATGATGGAATGT GGCAGGCAAACAAGTTGTTGCAGAGTTATAACTATGGAGGGTATAAAATCAAGGAGAAGCAAGGGTGTCTTTTGATATGCTGGCATGATAGACCTCTTTA CTCTGTCTCAGCATGGAGACCTAGGAGGTAA
AA sequence Show only first row Show all	>Lus10019773 pacid=23139277 polypeptide=Lus10019773 locus=Lus10019773.g ID=Lus10019773.BGIv1.0 annot-version=v1.0 MAGNVQEDKSTISSSSSPLQLFPWMSLSPAGAGSPFLSWDLQPEERGLCLIQLLRTCANHVASGSIENANISLGHISNLASPNGDTMQRIAAYFTEALAD RIMLKTWPGLHKALNSTRTTCSSAASEEMLVQKLFFELCPFLKLSYVITNQAIVEAMEGEKMIHIVDLNSFEPAQWIELLRTLSARPEGPPHLRITGIHE HKEVLDRMGARLVEEAEKLDIPFQFNSIPGKLENLDLECLRVKTGEALAVSSVLQLHSLLATDEQEVVARGLPSAARNHVQKFMQTNRSQKTLSEWLEND SSPDSALSPLSSSSMAPSPTMGTFLSSLCALSPKIMVITEQESDHNSHSLTERVAEAMNFYAALFDCLESSADHPRALLERQKVEKMLFGKEIKNIIACE GIERKERHEKLEKWILRVELAGFGRVPLSYDGMWQANKLLQSYNYGGYKIKEKQGCLLICWHDRPLYSVSAWRPRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10019773 [exp]	0	1
AT1G28540			unknown protein		Lus10042196 [exp]	2.2	0.8051
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10005927 [exp]	12.3	0.7111
AT5G22920			CHY-type/CTCHY-type/RING-type ...		Lus10023914 [exp]	29.1	0.6832
AT1G56220			Dormancy/auxin associated fami...		Lus10031488 [exp]	31.0	0.6884
AT4G31020			alpha/beta-Hydrolases superfam...		Lus10040038 [exp]	33.1	0.6934
AT3G10840			alpha/beta-Hydrolases superfam...		Lus10003690 [exp]	34.5	0.6938
AT1G15740			Leucine-rich repeat family pro...		Lus10035912 [exp]	36.4	0.6888
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10005133 [exp]	37.2	0.6596
AT2G27310			F-box family protein (.1)		Lus10003731 [exp]	43.0	0.6785
AT3G10220		EMB2804	EMBRYO DEFECTIVE 2804, tubulin...		Lus10026266 [exp]	49.2	0.6551

Compare expression of checked genes

Lus10019773 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.