Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52340 390 / 7e-138 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 228 / 3e-74 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 228 / 4e-74 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G29260 226 / 1e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 224 / 4e-72 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47140 220 / 4e-71 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 219 / 2e-70 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 218 / 2e-69 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 207 / 2e-66 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 204 / 2e-64 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016354 [exp] 557 / 0 AT1G52340 389 / 4e-137 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021320 [exp] 265 / 2e-88 AT1G52340 246 / 2e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016997 [exp] 263 / 1e-87 AT1G52340 249 / 2e-82 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021319 [exp] 248 / 9e-82 AT1G52340 229 / 1e-74 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026419 [exp] 248 / 3e-81 AT3G51680 367 / 9e-128 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021314 [exp] 244 / 4e-80 AT3G51680 238 / 6e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021312 [exp] 242 / 1e-79 AT3G51680 238 / 8e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014227 [exp] 240 / 8e-79 AT3G51680 231 / 3e-75 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016991 [exp] 240 / 9e-79 AT2G47140 238 / 2e-78 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G024300 [exp] 411 / 3e-146 AT1G52340 408 / 6e-145 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 278 / 6e-94 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 270 / 2e-90 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206800 [exp] 263 / 6e-88 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 263 / 8e-88 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 261 / 6e-87 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G200100 [exp] 253 / 8e-84 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 251 / 2e-83 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 241 / 3e-79 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206400 [exp] 240 / 8e-79 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10019777 pacid=23139265 polypeptide=Lus10019777 locus=Lus10019777.g ID=Lus10019777.BGIv1.0 annot-version=v1.0 ATGGCCTCAAGCAGCAGCTCCTTTGATCCCTCCCCTGCTACCCAGAACCAGAGGCTGTCCGGGAAAGTAGCGTTGATAACCGGAGGAGCGAGCGGGATAG GAGAGAGCATTGCTCGCCTCTTCCACAAACACGGCGCCAAGCTCTGTATCGTCGACCTACAAGACAAACTCGGAGACAGCCTCTGCCAATCCCTCGGCGG CGGACCAAACGGGGCCTATTACCTTCACTGCGACGTCACAAATGAAGAGCACATCAGCCGCGCGGTCGACTTTGCTGCCGAGAAATTCGGAACCATCGAC ATCCTCGTCAACAATGCTGGCATCACGGGTCCGCCGTGTTCGGACATCCGAGACGCCAAGCTTTCGGATTATGAGCTGGTGTTCGATGTCAATGTTAAAG GTACATTTCTGGGAATGAAGCACGCAGCAAGAGTGATGATCCCATCCTCAAAACGGGGCTCGATCATCAACCTATGCAGCGTTGCGGGAAACATGGGAGG GCTCGGTCCGCACACCTACACTGGCTCGAAGCATGCCGTCCTCGGTCTCACCAGGAGCGTTGCTGCCGAGCTAGGGAAGTACGGAATCCGGGTGAACTGC GTTTCGCCCTACGCGGTGCCCACAGGGCTTGCTCTGGCTCACTTGCCCGAAGACGAAAGGACCGAGGATGCAATGGCCGGATTCCGAGCATTCGCGGAGA AGAACGCGAACCTGAACGGGGTTGGGCTGGAGCCCGAGGACGTAGCTAATGCTGTGCTGTTCTTGGCAAGCGATGAAGCGAGGTATATTAGTGGTGATAA TCTGATGGTTGATGGTGGTCTCACTTGTACCAATCATTCGTTTCGTGTGTTTAGGTAG
AA sequence Show only first row Show all	>Lus10019777 pacid=23139265 polypeptide=Lus10019777 locus=Lus10019777.g ID=Lus10019777.BGIv1.0 annot-version=v1.0 MASSSSSFDPSPATQNQRLSGKVALITGGASGIGESIARLFHKHGAKLCIVDLQDKLGDSLCQSLGGGPNGAYYLHCDVTNEEHISRAVDFAAEKFGTID ILVNNAGITGPPCSDIRDAKLSDYELVFDVNVKGTFLGMKHAARVMIPSSKRGSIINLCSVAGNMGGLGPHTYTGSKHAVLGLTRSVAAELGKYGIRVNC VSPYAVPTGLALAHLPEDERTEDAMAGFRAFAEKNANLNGVGLEPEDVANAVLFLASDEARYISGDNLMVDGGLTCTNHSFRVFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10019777 [exp]	0	1
AT2G27770			Plant protein of unknown funct...		Lus10009405 [exp]	10.2	0.7058
AT2G19580		TET2	tetraspanin2 (.1)		Lus10007998 [exp]	13.5	0.7241
AT3G11320			Nucleotide-sugar transporter f...		Lus10009878 [exp]	23.4	0.7155
AT5G63870		PP7, ATPP7	serine/threonine phosphatase 7...		Lus10033478 [exp]	25.7	0.7061
AT4G27610			unknown protein		Lus10034127 [exp]	26.3	0.6012
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10003978 [exp]	30.6	0.7102
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Lus10039102 [exp]	32.7	0.6304
					Lus10020868 [exp]	36.3	0.6639
AT4G31600			UDP-N-acetylglucosamine (UAA) ...		Lus10026922 [exp]	36.3	0.6612
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10018887 [exp]	41.5	0.7085

Compare expression of checked genes

Lus10019777 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.