Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09600 298 / 5e-100 MYB LCL5 (LHY-CCA1-LIKE5), REVEILLE 8 (RVE8) REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) AT5G02840 287 / 1e-95 MYB LCL1 LHY/CCA1-like 1 (.1.2.3) AT5G52660 216 / 1e-67 MYB Homeodomain-like superfamily protein (.1.2) AT1G01520 209 / 2e-65 MYB ASG4 ALTERED SEED GERMINATION 4, Homeodomain-like superfamily protein (.1) AT4G01280 203 / 1e-62 MYB Homeodomain-like superfamily protein (.1.2) AT5G17300 102 / 4e-24 MYB RVE1 REVEILLE 1, Homeodomain-like superfamily protein (.1) AT5G37260 99 / 1e-23 MYB RVE2, CIR1 REVEILLE 2, CIRCADIAN 1, Homeodomain-like superfamily protein (.1) AT2G46830 100 / 1e-22 MYB AtCCA1, CCA1 circadian clock associated 1 (.1.2) AT1G18330 97 / 2e-22 MYB RVE7, EPR1 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) AT3G10113 97 / 2e-22 MYB Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014015 [exp] 448 / 2e-156 AT3G09600 317 / 3e-106 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Lus10036392 [exp] 219 / 2e-68 AT5G52660 306 / 5e-103 Homeodomain-like superfamily protein (.1.2) Lus10007914 [exp] 219 / 3e-68 AT5G52660 301 / 8e-101 Homeodomain-like superfamily protein (.1.2) Lus10027521 [exp] 217 / 3e-68 AT5G52660 353 / 1e-122 Homeodomain-like superfamily protein (.1.2) Lus10039284 [exp] 216 / 1e-66 AT5G52660 350 / 9e-120 Homeodomain-like superfamily protein (.1.2) Lus10038846 [exp] 188 / 2e-55 AT5G52660 292 / 2e-96 Homeodomain-like superfamily protein (.1.2) Lus10031322 [exp] 101 / 2e-23 AT1G18330 199 / 4e-60 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Lus10031893 [exp] 100 / 4e-23 AT3G10113 207 / 2e-63 Homeodomain-like superfamily protein (.1) Lus10042292 [exp] 99 / 1e-22 AT1G18330 198 / 5e-60 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G133000 [exp] 347 / 7e-119 AT3G09600 379 / 1e-132 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.016G083900 [exp] 345 / 1e-117 AT3G09600 375 / 4e-131 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.002G163100 [exp] 216 / 5e-67 AT4G01280 266 / 1e-87 Homeodomain-like superfamily protein (.1.2) Potri.017G146800 [exp] 210 / 2e-65 AT5G52660 303 / 3e-102 Homeodomain-like superfamily protein (.1.2) Potri.014G089300 [exp] 210 / 1e-64 AT4G01280 293 / 2e-98 Homeodomain-like superfamily protein (.1.2) Potri.004G073300 [exp] 203 / 1e-62 AT5G52660 298 / 2e-100 Homeodomain-like superfamily protein (.1.2) Potri.012G038300 [exp] 101 / 2e-23 AT1G18330 158 / 5e-44 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Potri.004G074300 [exp] 100 / 4e-23 AT5G17300 218 / 5e-66 REVEILLE 1, Homeodomain-like superfamily protein (.1) Potri.015G030400 [exp] 100 / 6e-23 AT1G18330 170 / 1e-48 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Potri.002G180800 [exp] 99 / 2e-22 AT1G01060 369 / 1e-117 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10019902 pacid=23163946 polypeptide=Lus10019902 locus=Lus10019902.g ID=Lus10019902.BGIv1.0 annot-version=v1.0 ATGAATTCCAACTCTACTTCCTCCTCATCGAATCCACCACCTCCGCCGCCTCCTGCACCGCCTCCAACCGCCACGTCATCATCCATGGAGACGTCCACTC ACACTGCTGACGCCTCCGGCAAGAAGGTCAGGAAGCCGTACACCATCACCAAGTCTCGCGAGAGCTGGACCGAGGAAGAGCACGATAAGTTCCTTGAAGC TCTTCAGCTGTTTGATCGTGACTGGAAGAAGATAGAAGACTTCGTTGGTTCGAAAACAGTAATCCAGATTAGGAGCCACGCACAGAAGTATTTCTTGAAG GTCCAAAAGAACGGCACTGTTGCACATGTTCCTCCTCCTCGCCCCAAGCGCAAAGCGGCTCATCCTTATCCTCAAAAGGCGTCCAAAAATGTTTTGATCC CATTCCCAATTCCTTACCCTGCATTAATCAATACCCTTCCAACCGCGTACACCCAGTGGGATGATCCTTCCATGCTAATAAACAACTCAACAAACTGTAT CATGGCATCACCAGATGATTTTGCGAATTTTCATCTAGTTGGAGGCATGCCTGATATTGGATCAAAGGGGGTCGCGACATTTAATAACATTAGTCTTAGT GGCCTTGGAACCTCGAACAGACCCCTTCCAAGTTCTGATAAAGTAAAACAAGAGAAACAAGCTCCAGTTGTTCATGGGATCCCAGATTTTGCAGAAGTGT ATAGCTTCATTGGGAGTGTGTTTGATCCAGACACCAAAGGCCATGTGAGGAAGCTCAAAGAAATGGATCCGATAAACTATGAAACGGTCGTATTGTTGAT GAAGAATCTTACAATGAACTTGTCTAGTCCCAGATTTGAGCCAATTGTAAGAGTTCTTGCACCTAATTCTATAGAGATGTCCTGTCGTCTTTCGACACGG TGGCTGTCGGCTCACAGCACCAAAATGATGTATCATGTTGAAGTGCATATGGCGAAATTGGTGCGAGGACATCCATCCTCCGCCATAGTAAGTAGTCATG AAGGAGGCTCAATGGCCATTCAAAGGAATCGTTCTCCGCAGTATTTGGCAAAGCCTGAGGTGGATGTCAAGTTTCCGCTGGCTGAGCAAAGGAACTGTGC AGGGCTGCTGTTCCGTTGGTCATTTCATGACCACTCTTAA
AA sequence Show only first row Show all	>Lus10019902 pacid=23163946 polypeptide=Lus10019902 locus=Lus10019902.g ID=Lus10019902.BGIv1.0 annot-version=v1.0 MNSNSTSSSSNPPPPPPPAPPPTATSSSMETSTHTADASGKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLK VQKNGTVAHVPPPRPKRKAAHPYPQKASKNVLIPFPIPYPALINTLPTAYTQWDDPSMLINNSTNCIMASPDDFANFHLVGGMPDIGSKGVATFNNISLS GLGTSNRPLPSSDKVKQEKQAPVVHGIPDFAEVYSFIGSVFDPDTKGHVRKLKEMDPINYETVVLLMKNLTMNLSSPRFEPIVRVLAPNSIEMSCRLSTR WLSAHSTKMMYHVEVHMAKLVRGHPSSAIVSSHEGGSMAIQRNRSPQYLAKPEVDVKFPLAEQRNCAGLLFRWSFHDHS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Lus10019902 [exp]	0	1
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10005134 [exp]	1.7	0.9186
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10030184 [exp]	2.4	0.8891
AT5G19750			Peroxisomal membrane 22 kDa (M...		Lus10039003 [exp]	3.0	0.7309
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10040134 [exp]	3.2	0.8072
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10030183 [exp]	3.5	0.8709
AT3G54500			unknown protein		Lus10024170 [exp]	5.3	0.8177
AT1G01860		PFC1	PALEFACE 1, Ribosomal RNA aden...		Lus10009319 [exp]	6.0	0.7743
AT5G39660	DOF	CDF2, AtDof5. 2	cycling DOF factor 2 (.1.2)		Lus10037167 [exp]	7.0	0.7477
AT3G54500			unknown protein		Lus10039553 [exp]	8.4	0.7286
AT4G38960	CO		B-box type zinc finger family ...		Lus10031087 [exp]	11.0	0.7440

Compare expression of checked genes

Lus10019902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.