Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36920 256 / 3e-80 AP2_ERF FL1, FLO2, AP2 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) AT2G28550 253 / 1e-78 AP2_ERF TOE1, RAP2.7 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) AT5G67180 241 / 2e-75 AP2_ERF TOE3 target of early activation tagged (EAT) 3 (.1) AT5G60120 171 / 1e-47 AP2_ERF TOE2 target of early activation tagged (EAT) 2 (.1), target of early activation tagged (EAT) 2 (.2) AT3G54990 124 / 2e-32 AP2_ERF SMZ SCHLAFMUTZE, Integrase-type DNA-binding superfamily protein (.1.2) AT5G57390 130 / 3e-32 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT1G72570 127 / 6e-32 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G51190 128 / 9e-32 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT3G20840 126 / 4e-31 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT4G37750 126 / 5e-31 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026477 [exp] 508 / 1e-179 AT4G36920 298 / 3e-98 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10015055 [exp] 439 / 2e-150 AT2G28550 302 / 1e-97 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10023165 [exp] 421 / 1e-142 AT4G36920 302 / 2e-97 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10019331 [exp] 245 / 2e-75 AT4G36920 392 / 1e-133 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10009374 [exp] 243 / 1e-74 AT4G36920 394 / 2e-134 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10041595 [exp] 241 / 2e-74 AT4G36920 370 / 2e-125 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10004990 [exp] 238 / 5e-72 AT4G36920 369 / 2e-123 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10018124 [exp] 233 / 1e-70 AT2G28550 342 / 4e-113 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10036141 [exp] 212 / 2e-62 AT2G28550 330 / 4e-108 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G084500 [exp] 340 / 4e-112 AT2G28550 306 / 6e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.006G132400 [exp] 332 / 7e-109 AT2G28550 307 / 2e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.008G045300 [exp] 258 / 6e-80 AT2G28550 292 / 1e-93 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.007G046200 [exp] 252 / 2e-77 AT4G36920 361 / 2e-120 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Potri.005G140700 [exp] 248 / 3e-76 AT4G36920 355 / 1e-118 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Potri.010G216200 [exp] 221 / 6e-66 AT2G28550 263 / 9e-83 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.017G078600 [exp] 129 / 9e-33 AT3G54320 289 / 2e-94 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.003G185300 [exp] 126 / 4e-32 AT1G16060 291 / 5e-97 ARIA-interacting double AP2 domain protein (.1.2) Potri.014G012200 [exp] 129 / 1e-31 AT4G37750 405 / 8e-134 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.001G169500 [exp] 128 / 1e-31 AT1G72570 389 / 2e-131 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10019905 pacid=23163970 polypeptide=Lus10019905 locus=Lus10019905.g ID=Lus10019905.BGIv1.0 annot-version=v1.0 ATGTTGGTGGATCTTAACCTCACAGTGGACGCTAACTCTCTCACCTCCCTCTACATGGACGGTGGGGGTAGGTGTGACGACAATCGGAAGAGGTGTTTGG ATTTCTCTCCCTCCGGTGGTAACAATCAAGTGGAGAGCTCCGGCAGCTTTAACTCCTCTTCCGTTGTTAACGTCGACCGAAACTGCAGCAATGCCGCCGC CACTGCTGCTCCGGGAGATGAGGATTCTTGCTCTAATAACGGCGGCGGTTTGTTTGGCTACAGTTTCCGTATCTTGAACGACGAGCAGCCAGCGAGGAAG AAGACGACGCCGACTGTTGTCGATGAGGAGAGTCATGCCGATGGGACTATTCAGCTCTTTCCGGTTGGCGGCGGCGGAGTAGGAGGTGGAGGACTCAGCT CGATGCTTCAGTGTTTGAGTTCGGGGAAGCAGTGGTTGGATCTTGGAGGGAGGGAGCTTGAGTATGGCGGTATGGCTGAGAAGATTGTTGCTCAGGTCCA GCTGCAGCAGCAACAGCAGCAGAAGCCTCCGGTGAAGAAGAACCGGCGAGGACCCCGGTCAAAGAGCTCCCAGTACCGTGGCGTCACGTTTTACCGGAGG ACTGGCCGCTGGGAATCGCACATTTGGGATTGCGGTAAACAAGTATACCTTGGGGGATTCGACACAGCACACTCTGCCGCGAGGGCTTATGATCGAGCTG CGATCAAGTTCCGTGGAATCGATGCGGATATCAATTTCAATGTCAGCGATTACGATGACGATATTGGTCAGATGAGCAATTACACAAAGGAGGAATTTGT TCAGATTCTTCGTCGCCAGAGCAGTGGGTTCTCAAGGGGAAGCTCCAAGTTCAGAGGAGTCACACTCCACAAATGTGGGAGATGGGAAGCTCGGATGGGC CAGTTTCTGGGCAAGAAGTACATATACCTTGGCCTTTATGATAGCGAGATAGAAGCTGCGAGGGCCTATGACATGACTGCCATCAAATGCAATGGAAGCG AGGCCGTCACCAACTTTGAACCCAGCTCATATGATGAAGAGATCATATCCGGTGTCAAGCCTGGAGATCATAAGCTTGATTTGAACTTGGGTATTGCTCC TCCTGAGGCACCTGAAGTTAAAAGGAACTCGAACTCGGCTTCAGCAACGATGAAGAACCGTCCTCAACTATCTCATCTACCGCTCATGGGAACTGAAGTC CTTCCTACCGGACCTAGCGTAAACCCTGGTTTCTTCCCTATCTCCAAGGAAAGAGCAATGGATAAGAGGGTAGGAGCGCACCCTAGTTTGCTAAACTGGG CATGGAAGCTACAAGGTCCATACGGTAGGGAAAATCATCCACTGCCACTCTTCTCCAGTGCAGCATCATCAGGATTCTCGTCTTCGACAGTTACAACTAC TCCTAATTCCGCTGTTGCAGCATCAGCAGCATTAGGAGCTCCTCCTCAACTTTACTTCCAGAACTCGGCCATCCAGCATTACTCTTAA
AA sequence Show only first row Show all	>Lus10019905 pacid=23163970 polypeptide=Lus10019905 locus=Lus10019905.g ID=Lus10019905.BGIv1.0 annot-version=v1.0 MLVDLNLTVDANSLTSLYMDGGGRCDDNRKRCLDFSPSGGNNQVESSGSFNSSSVVNVDRNCSNAAATAAPGDEDSCSNNGGGLFGYSFRILNDEQPARK KTTPTVVDEESHADGTIQLFPVGGGGVGGGGLSSMLQCLSSGKQWLDLGGRELEYGGMAEKIVAQVQLQQQQQQKPPVKKNRRGPRSKSSQYRGVTFYRR TGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGIDADINFNVSDYDDDIGQMSNYTKEEFVQILRRQSSGFSRGSSKFRGVTLHKCGRWEARMG QFLGKKYIYLGLYDSEIEAARAYDMTAIKCNGSEAVTNFEPSSYDEEIISGVKPGDHKLDLNLGIAPPEAPEVKRNSNSASATMKNRPQLSHLPLMGTEV LPTGPSVNPGFFPISKERAMDKRVGAHPSLLNWAWKLQGPYGRENHPLPLFSSAASSGFSSSTVTTTPNSAVAASAALGAPPQLYFQNSAIQHYS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10019905 [exp]	0	1
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10026477 [exp]	1.7	0.9468
AT3G19850			Phototropic-responsive NPH3 fa...		Lus10012901 [exp]	11.4	0.9426
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10029803 [exp]	12.0	0.9286
AT3G01840			Protein kinase superfamily pro...		Lus10041574 [exp]	12.1	0.9399
AT1G45688			unknown protein		Lus10029743 [exp]	15.5	0.9388
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10021904 [exp]	15.7	0.9398
AT1G04780			Ankyrin repeat family protein ...		Lus10000752 [exp]	16.1	0.9071
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Lus10028992 [exp]	20.4	0.9395
AT2G33840			Tyrosyl-tRNA synthetase, class...		Lus10032773 [exp]	20.7	0.9320
AT5G26230		MAKR1	membrane-associated kinase reg...		Lus10021928 [exp]	21.0	0.9176

Compare expression of checked genes

Lus10019905 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.