Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42960 186 / 4e-59 ASD, ATA1 TAPETUM1, TAPETUM 1 (.1) AT3G51680 138 / 6e-40 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 129 / 1e-36 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 126 / 3e-35 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 117 / 5e-32 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 115 / 8e-32 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G29260 113 / 9e-31 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 112 / 1e-30 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 112 / 2e-30 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47140 106 / 3e-28 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029438 [exp] 132 / 1e-37 AT3G51680 396 / 3e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10022756 [exp] 131 / 4e-37 AT3G51680 397 / 2e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10038057 [exp] 128 / 1e-36 AT2G47140 341 / 4e-119 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009992 [exp] 126 / 1e-35 AT2G47140 345 / 1e-120 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026419 [exp] 127 / 2e-35 AT3G51680 367 / 9e-128 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040909 [exp] 120 / 2e-34 AT4G03140 246 / 1e-81 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041518 [exp] 117 / 9e-32 AT3G26770 352 / 2e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012575 [exp] 113 / 2e-30 AT3G26770 353 / 1e-122 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10005927 [exp] 108 / 9e-30 AT4G03140 208 / 2e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G141800 [exp] 226 / 3e-74 AT3G42960 298 / 3e-101 TAPETUM1, TAPETUM 1 (.1) Potri.010G100000 [exp] 207 / 3e-67 AT3G42960 250 / 4e-83 TAPETUM1, TAPETUM 1 (.1) Potri.016G129100 [exp] 134 / 1e-38 AT3G51680 383 / 3e-134 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G105900 [exp] 129 / 1e-36 AT3G51680 412 / 4e-146 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.014G145800 [exp] 125 / 3e-35 AT3G26760 348 / 8e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G236700 [exp] 122 / 4e-34 AT3G26760 342 / 2e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G125600 [exp] 122 / 8e-34 AT3G51680 394 / 8e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.014G115300 [exp] 119 / 4e-33 AT2G47140 346 / 3e-121 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206900 [exp] 115 / 2e-31 AT2G47140 229 / 3e-75 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.014G135510 [exp] 115 / 3e-31 AT4G03140 400 / 8e-141 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10019945 pacid=23156251 polypeptide=Lus10019945 locus=Lus10019945.g ID=Lus10019945.BGIv1.0 annot-version=v1.0 ATGTTCAACAACGCCGGGATCCCGGGGCGCGACGGCAGCATAACGAACCTAGACCCGGAGGAAACCAATCGAATCCTGGCGGTCAATCTTCAAGGCGTAC TCAACGGGATCAAGCACGCAGCCAGATCCATGATCCGAACCGGCACCCGCGGGTCTATAATATGCGCGGCAAGCTCGGCCTCCGTGATGGGAGGGTTGGG GTCGCACGGAGTGGTGGCGGCGAGCGGGTACAGGGCGTCGAAGGGGGAGATGTTAGCGGCAGTGAGGAGCAGCGCCTGCGAGCTAGGGGAGCACGGGATC CGGGTGAATTGCATATCGGCGCATGGCGTGGCGTCGGAGATGCTGGTGGGAGCGTACCGTAGGGTATTGGGGAAGGAGGAGATGGCGGCGGAGGAGGTGG AGGAGATCGTGGGGAAAACTGGGAGTCTGGTGAAGGGAAGGGGAGGAAAGGTGGAGGACGTAGCAAACGGCGCCGTATTCTTGGCGAGTGAGGAAGAGGC TGGGTTTGTAACGGGGCATAACCTGGTGATTGACGGCGGTTATACTTGTGCTATTGGGGATATGAGCTTCATTTACAGGGACGGATATTAA
AA sequence Show only first row Show all	>Lus10019945 pacid=23156251 polypeptide=Lus10019945 locus=Lus10019945.g ID=Lus10019945.BGIv1.0 annot-version=v1.0 MFNNAGIPGRDGSITNLDPEETNRILAVNLQGVLNGIKHAARSMIRTGTRGSIICAASSASVMGGLGSHGVVAASGYRASKGEMLAAVRSSACELGEHGI RVNCISAHGVASEMLVGAYRRVLGKEEMAAEEVEEIVGKTGSLVKGRGGKVEDVANGAVFLASEEEAGFVTGHNLVIDGGYTCAIGDMSFIYRDGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G42960		ASD, ATA1	TAPETUM1, TAPETUM 1 (.1)		Lus10019945 [exp]	0	1
AT1G20920			P-loop containing nucleoside t...		Lus10025525 [exp]	8.1	0.6883
AT1G12440			A20/AN1-like zinc finger famil...		Lus10006671 [exp]	17.9	0.6816
AT2G24940		ATMAPR2	membrane-associated progestero...		Lus10002241 [exp]	29.0	0.6760
AT1G76570			Chlorophyll A-B binding family...		Lus10005421 [exp]	31.1	0.6585
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10017846 [exp]	38.3	0.6569
AT5G63690			Nucleic acid-binding, OB-fold-...		Lus10035799 [exp]	39.3	0.6280
AT3G21740		APO4	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10027182 [exp]	42.7	0.6213
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Lus10023267 [exp]	46.3	0.6434
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Lus10041561 [exp]	50.6	0.6542
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021640 [exp]	51.5	0.6552

Compare expression of checked genes

Lus10019945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.