Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25090 111 / 4e-31 AtENODL13 early nodulin-like protein 13 (.1) AT5G57920 110 / 5e-31 AtENODL10 early nodulin-like protein 10 (.1) AT2G25060 109 / 2e-30 AtENODL14 early nodulin-like protein 14 (.1) AT4G30590 109 / 2e-30 AtENODL12 early nodulin-like protein 12 (.1) AT3G20570 103 / 6e-28 AtENODL9 early nodulin-like protein 9 (.1) AT4G31840 100 / 3e-27 AtENODL15 early nodulin-like protein 15 (.1) AT2G23990 99 / 5e-26 AtENODL11 early nodulin-like protein 11 (.1.2) AT4G27520 84 / 2e-19 AtENODL2 early nodulin-like protein 2 (.1) AT4G32490 77 / 8e-18 AtENODL4 early nodulin-like protein 4 (.1) AT5G53870 77 / 4e-17 AtENODL1 early nodulin-like protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036257 [exp] 139 / 3e-42 AT2G25060 110 / 3e-31 early nodulin-like protein 14 (.1) Lus10003432 [exp] 110 / 2e-30 AT5G25090 167 / 5e-53 early nodulin-like protein 13 (.1) Lus10026880 [exp] 108 / 4e-30 AT5G25090 167 / 8e-53 early nodulin-like protein 13 (.1) Lus10022160 [exp] 96 / 7e-26 AT2G25060 76 / 5e-18 early nodulin-like protein 14 (.1) Lus10018617 [exp] 86 / 6e-21 AT4G28365 150 / 5e-46 early nodulin-like protein 3 (.1) Lus10043063 [exp] 82 / 1e-19 AT3G20570 153 / 4e-47 early nodulin-like protein 9 (.1) Lus10039852 [exp] 81 / 2e-19 AT4G28365 150 / 8e-46 early nodulin-like protein 3 (.1) Lus10011158 [exp] 81 / 4e-19 AT3G20570 149 / 2e-45 early nodulin-like protein 9 (.1) Lus10009196 [exp] 81 / 1e-18 AT5G53870 154 / 3e-44 early nodulin-like protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G018200 [exp] 121 / 3e-35 AT2G25060 177 / 7e-57 early nodulin-like protein 14 (.1) Potri.006G264600 [exp] 119 / 2e-34 AT2G25060 184 / 9e-60 early nodulin-like protein 14 (.1) Potri.006G184100 [exp] 107 / 7e-30 AT4G31840 174 / 5e-56 early nodulin-like protein 15 (.1) Potri.017G011200 [exp] 86 / 6e-21 AT4G32490 157 / 2e-48 early nodulin-like protein 4 (.1) Potri.011G135400 [exp] 84 / 2e-20 AT3G20570 138 / 4e-41 early nodulin-like protein 9 (.1) Potri.011G117800 [exp] 80 / 6e-18 AT5G53870 158 / 3e-45 early nodulin-like protein 1 (.1) Potri.001G419200 [exp] 77 / 2e-17 AT3G20570 153 / 1e-46 early nodulin-like protein 9 (.1) Potri.001G398800 [exp] 76 / 1e-16 AT4G28365 145 / 9e-42 early nodulin-like protein 3 (.1) Potri.006G259000 [exp] 71 / 1e-15 AT5G26330 144 / 6e-44 Cupredoxin superfamily protein (.1) Potri.002G161300 [exp] 70 / 3e-15 AT5G26330 146 / 5e-45 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10019955 pacid=23156155 polypeptide=Lus10019955 locus=Lus10019955.g ID=Lus10019955.BGIv1.0 annot-version=v1.0 ATGGCTCGTTTGATCTCCATACTCTGTCTCGTTTCCCTTGTCATCGCCGTTTCTGAAGCAAGGGAGATCGTCGTCGGAGGTAGAGAGAGCAAGACCTTCT GGAGAGTTCCCGGCGGTAATCTTACAAATCTCGACTATTGGGCTGAACAACTCAGGTTCTCTCCCGGAGATGTTCTTGTATGGTATTTGGAGGCAAAAGA GGGATCAGTGCTTCAAGTGAGCAAAGAAGCGTATGAAAGCTGCGACAAGACGAATCCGATCAAAGAACTGAAAGACGGCGTTGAAAAGGTGAGTTTGGAA CGGTCGGGACCTTTTTACTTCATCAGTGGGAAGGAACCTGACTGCAAGAAAGGGATGAAGCTTGAAGTGGTCGTTCTAGCAGATCATCATCAGCAGCAGC AGCGTCACTTACCTCCCTCTCCTGCTCCCTCGCCGTATTCTTCGAGTGCGTCGAAGGTCCTGAACTACCGATGTGCCACTGTTGTTGTAGCTGCTGCTGC TGCAATGTTGATTTGA
AA sequence Show only first row Show all	>Lus10019955 pacid=23156155 polypeptide=Lus10019955 locus=Lus10019955.g ID=Lus10019955.BGIv1.0 annot-version=v1.0 MARLISILCLVSLVIAVSEAREIVVGGRESKTFWRVPGGNLTNLDYWAEQLRFSPGDVLVWYLEAKEGSVLQVSKEAYESCDKTNPIKELKDGVEKVSLE RSGPFYFISGKEPDCKKGMKLEVVVLADHHQQQQRHLPPSPAPSPYSSSASKVLNYRCATVVVAAAAAMLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30590		AtENODL12	early nodulin-like protein 12 ...		Lus10019955 [exp]	0	1
					Lus10007414 [exp]	1.4	0.8420
AT2G48140		EDA4	embryo sac development arrest ...		Lus10042613 [exp]	2.4	0.8093
					Lus10014650 [exp]	4.9	0.8185
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10021387 [exp]	6.9	0.6894
AT3G05950			RmlC-like cupins superfamily p...		Lus10035280 [exp]	8.2	0.7825
					Lus10041736 [exp]	9.2	0.6690
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10013268 [exp]	9.2	0.7825
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10003345 [exp]	10.1	0.7825
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10003585 [exp]	10.9	0.7825
					Lus10027457 [exp]	11.3	0.7734

Compare expression of checked genes

Lus10019955 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.