Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20140 791 / 0 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) AT4G29040 787 / 0 RPT2A regulatory particle AAA-ATPase 2A (.1) AT5G58290 384 / 4e-125 RPT3 regulatory particle triple-A ATPase 3 (.1) AT5G19990 332 / 8e-105 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G20000 330 / 3e-104 RPT6A AAA-type ATPase family protein (.1) AT1G09100 328 / 2e-103 RPT5B 26S proteasome AAA-ATPase subunit RPT5B (.1) AT3G05530 327 / 3e-103 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1) AT1G45000 313 / 5e-98 AAA-type ATPase family protein (.1.2) AT1G53750 313 / 1e-97 RPT1A regulatory particle triple-A 1A (.1) AT5G43010 312 / 1e-97 RPT4A regulatory particle triple-A ATPase 4A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006976 [exp] 805 / 0 AT4G29040 828 / 0.0 regulatory particle AAA-ATPase 2A (.1) Lus10011901 [exp] 796 / 0 AT2G20140 844 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10022834 [exp] 682 / 0 AT2G20140 735 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10001313 [exp] 659 / 0 AT4G29040 673 / 0.0 regulatory particle AAA-ATPase 2A (.1) Lus10015524 [exp] 647 / 0 AT2G20140 659 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10017762 [exp] 334 / 1e-105 AT5G19990 797 / 0.0 regulatory particle triple-A ATPase 6A (.1) Lus10031492 [exp] 333 / 4e-105 AT3G05530 820 / 0.0 regulatory particle triple-A ATPase 5A (.1) Lus10029887 [exp] 332 / 6e-105 AT3G05530 837 / 0.0 regulatory particle triple-A ATPase 5A (.1) Lus10006854 [exp] 321 / 5e-102 AT5G58290 526 / 0.0 regulatory particle triple-A ATPase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G252600 [exp] 791 / 0 AT4G29040 838 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.014G194700 [exp] 786 / 0 AT4G29040 829 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.016G028000 [exp] 382 / 2e-124 AT5G58290 781 / 0.0 regulatory particle triple-A ATPase 3 (.1) Potri.006G031000 [exp] 379 / 7e-123 AT5G58290 771 / 0.0 regulatory particle triple-A ATPase 3 (.1) Potri.010G098300 [exp] 334 / 1e-105 AT5G19990 768 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.008G144100 [exp] 333 / 3e-105 AT5G19990 741 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.005G025100 [exp] 331 / 1e-104 AT3G05530 795 / 0.0 regulatory particle triple-A ATPase 5A (.1) Potri.013G016800 [exp] 331 / 2e-104 AT3G05530 800 / 0.0 regulatory particle triple-A ATPase 5A (.1) Potri.002G031400 [exp] 316 / 3e-99 AT1G45000 745 / 0.0 AAA-type ATPase family protein (.1.2) Potri.005G231700 [exp] 315 / 5e-99 AT1G45000 756 / 0.0 AAA-type ATPase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10019995 pacid=23156124 polypeptide=Lus10019995 locus=Lus10019995.g ID=Lus10019995.BGIv1.0 annot-version=v1.0 ATGGGACAAGGTGCGTCGGGAATGAACCGGCCTCCGGGCGATAAGAAAGGTGACCCCGACAAGAAGGACAAGAAGTACGAGCCGGCCGCTCCCCCGTCCC GCGTCGGCCGTAAGCAGCGCAAGCAGAAGGGTTCCGAGACGGCTGCGAGGCTGCCTACTGTGACGCCGCTAACCAAGTGCAAGCTGCGCCTGTTGAAGAT GGAGCGCATCAAGGATTACTTGCTGATGGAGGAGGAATTCGTCTCCAATCAGGAGCGGCTGAAGCCTCAGGAGGAGAAGAACGAGGAGGATCGATCCAAA GTCGATGATCTCAGAGGATCTCCAATGAGCGTCGGGAATCTCGAGGAGCTTATCGATGAAAATCACGCCATCGTTTCGTCATCTGTTGGTCCTGAGTACT ATGTAGGGATCCTCTCGTTTGTTGATAAGGATCAGATCGAGCCTGGCTGCGCAATCCTAATGCATAATAAAGTGCTTTCTGTTGTTGGGCTTCTTCAAGA TGATGTTGATCCCATGGTTTCAGTGATGAAAGTTGAGAAAGCTCCGCTACAATCTTATGCGGACATTGGTGGGTTGGATGCTCAAATACAGGAGATTAAG GAAGCAGTTGAGCTTCCTCTTACTCATCCTGAACTGTATGAAGACATCGGGATTAGACCTCCTAAAGGAGTTATCCTCTATGGAGAGCCAGGAACTGGGA AAACATTGCTTGCAAAGGCTGTTGCGAATTCTACTTCCGCAACTTTCTTGCGTGTAGTAGGAAGCGAACTGATTCAGAAGTATCTAGGTGATGGTCCAAA ACTGGTTAGGGAGTTGTTTAGAGTAGCGGATGACCTTTCACCTTCCATTGTATTCATCGACGAAATCGATGCAGTTGGCACAAAGAGGTATGATGCAAAT TCTGGTGGTGAGCGCGAGATTCAGAGGACTATGCTGGAATTGCTAAACCAGTTGGATGGGTTTGATTCAAGGGGAGACGTGAAAGTGATTCTTGCAACCA ACAGGATCGAAAGTCTTGATCCTGCATTGTTACGTCCAGGACGAATTGATCGGAAGATAGAATTCCCACTTCCAGATATCAAAACCAGAAGGCGCATCTT CCAGATACACACATCAAGGATGACATTAGCAGACGATGTTAACTTGGAAGAGTTTGTGATGACCAAGGACGAGTTTTCAGGTGCTGATATCAAAGCGATC TGCACGGAGGCAGGGTTGCTTGCTTTAAGAGAGAGGCGTATGAAGGTAACGCATGGGGACTTCAAGAAAGCAAAGGAGAAGGTTATGTTCAAGAAGAAAG AAGGGGTGCCAGAAGGACTGTACATAAAGATTAAGCAGCGCAAGCAGAAGGGTTCCGAGACGGCTGCGAGGCTGCCTACTGTGACGCCGCTAACCAAGTG CAAGCTGCGCCTGTTGAAGATGGAGCGCATCAAGGATTACTTGCTGATGGAGGAGGAATTCGTCTCCAATCAGGAGCGGCTGAAGCCTCAGGAGGAGAAG AACGAGGAGGATCGATCCAAAGTCGATGATCTCAGAGGATCTCCAATGAGCGTCGGGAATCTCGAGGAGCTTATCGATGAAAATCACGCCATCGTTTCGT CATCTGTTGGTCCTGAGTACTATGTAGGGATCCTCTCGTTTGTTGATAAGGATCAGATCGAGCCTGGCTGCGCAATCCTAATGCATAATAAAGTGCTTTC TGTTGTTGGGCTTCTTCAAGATGATGTTGATCCCATGGTTTCAGTGATGAAAGTTGAGAAAGCTCCGCTACAATCTTATGCGGACATTGGTGGGTTGGAT GCTCAAATACAGGAGATTAAGGAAGCAGTTGAGCTTCCTCTTACTCATCCTGAACTGTATGAAGACATCGGGATTAGACCTCCTAAAGGAGTTATCCTCT ATGGAGAGCCAGGAACTGGGAAAACATTGCTTGCAAAGGCTGTTGCGAATTCTACTTCCGCAACTTTCTTGCGTGTAGTAGGAAGCGAACTGATTCAGAA GTATCTAGGTGATGGTCCAAAACTGGTTAGGGAGTTGTTTAGAGTAGCGGATGACCTTTCACCTTCCATTGTATTCATCGACGAAATCGATGCAGTTGGC ACAAAGAGGTATGATGCAAATTCTGGTGGTGAGCGCGAGATTCAGAGGACTATGCTGGAATTGCTAAACCAGTTGGATGGGTTTGATTCAAGGGGAGACG TGAAAGTGATTCTTGCAACCAACAGGATCGAAAGTCTTGATCCTGCATTGTTACGTCCAGGACGAATTGATCGGAAGATAGAATTCCCACTTCCAGATAT CAAAACCAGAAGGCGCATCTTCCAGATACACACATCAAGGATGACATTAGCAGACGATGTTAACTTGGAAGAGTTTGTGATGACCAAGGACGAGTTTTCA GGTGCTGATATCAAAGCGATCTGCACGGAGGCAGGGTTGCTTGCTTTAAGAGAGAGGCGTATGAAGGTGAAACTCCGAAATCAAATTGTGGATCTTGGTT TCTATCTCAGCTTGTGTTCCTGGTCTTGCTTACTTCATCTCCTAAGCGCTGAAACCGATTTCTCTGTTGGTTTTGTGATTGGGAATGTAGGTAACGCATG GGGACTTCAAGAAAGCAAAGGAGAAGGTTATGTTCAAGAAGAAAGAAGGGGTGCCAGAAGGACTGTACATGTAAAAAAAAGGCCGTTTACTAAAACAAGT GCCGGATCACTTCATCCACAGAACAAATGGAAGTGTAGGCAATGA
AA sequence Show only first row Show all	>Lus10019995 pacid=23156124 polypeptide=Lus10019995 locus=Lus10019995.g ID=Lus10019995.BGIv1.0 annot-version=v1.0 MGQGASGMNRPPGDKKGDPDKKDKKYEPAAPPSRVGRKQRKQKGSETAARLPTVTPLTKCKLRLLKMERIKDYLLMEEEFVSNQERLKPQEEKNEEDRSK VDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQIEPGCAILMHNKVLSVVGLLQDDVDPMVSVMKVEKAPLQSYADIGGLDAQIQEIK EAVELPLTHPELYEDIGIRPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAN SGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAI CTEAGLLALRERRMKVTHGDFKKAKEKVMFKKKEGVPEGLYIKIKQRKQKGSETAARLPTVTPLTKCKLRLLKMERIKDYLLMEEEFVSNQERLKPQEEK NEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQIEPGCAILMHNKVLSVVGLLQDDVDPMVSVMKVEKAPLQSYADIGGLD AQIQEIKEAVELPLTHPELYEDIGIRPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVG TKRYDANSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFS GADIKAICTEAGLLALRERRMKVKLRNQIVDLGFYLSLCSWSCLLHLLSAETDFSVGFVIGNVGNAWGLQESKGEGYVQEERRGARRTVHVKKRPFTKTS AGSLHPQNKWKCRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20140		RPT2b	regulatory particle AAA-ATPase...		Lus10019995 [exp]	0	1
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Lus10040091 [exp]	4.7	0.8648
AT3G10860			Cytochrome b-c1 complex, subun...		Lus10019118 [exp]	9.2	0.8316
AT2G30050			transducin family protein / WD...		Lus10037571 [exp]	14.8	0.8573
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Lus10001313 [exp]	19.5	0.8581
AT3G47300		SELT	SELT-like protein precursor (....		Lus10001253 [exp]	23.2	0.8419
AT5G52980			unknown protein		Lus10005024 [exp]	26.9	0.8278
AT3G58600			Adaptin ear-binding coat-assoc...		Lus10000356 [exp]	28.9	0.8056
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Lus10010326 [exp]	30.8	0.8361
AT2G42910			Phosphoribosyltransferase fami...		Lus10010935 [exp]	35.7	0.8289
					Lus10019700 [exp]	37.1	0.8045

Compare expression of checked genes

Lus10019995 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.