Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07040 551 / 0 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT5G35450 292 / 8e-85 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G48620 290 / 4e-84 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G53350 290 / 5e-84 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G46530 288 / 7e-84 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT5G43470 285 / 3e-82 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58390 271 / 2e-77 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G46730 270 / 3e-77 NB-ARC domain-containing disease resistance protein (.1) AT3G46710 262 / 2e-74 NB-ARC domain-containing disease resistance protein (.1) AT1G58410 261 / 7e-74 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002945 [exp] 1635 / 0 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 1282 / 0 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 1259 / 0 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014712 [exp] 995 / 0 AT3G07040 492 / 3e-159 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 948 / 0 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014922 [exp] 566 / 0 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10019530 [exp] 517 / 2e-173 AT3G07040 311 / 4e-95 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10003521 [exp] 437 / 1e-146 AT3G07040 192 / 4e-55 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10038983 [exp] 439 / 5e-139 AT3G07040 468 / 5e-150 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G216800 [exp] 584 / 0 AT3G07040 573 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134400 [exp] 474 / 6e-152 AT3G07040 427 / 3e-134 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134450 [exp] 470 / 6e-151 AT3G07040 488 / 1e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099100 [exp] 468 / 3e-150 AT3G07040 482 / 8e-156 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.018G013500 [exp] 467 / 3e-150 AT3G07040 484 / 7e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134300 [exp] 468 / 5e-150 AT3G07040 487 / 2e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.005G035400 [exp] 466 / 1e-149 AT3G07040 422 / 6e-133 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099000 [exp] 463 / 4e-148 AT3G07040 479 / 2e-154 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134475 [exp] 462 / 4e-148 AT3G07040 413 / 1e-129 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134500 [exp] 461 / 2e-147 AT3G07040 422 / 1e-132 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10020016 pacid=23156212 polypeptide=Lus10020016 locus=Lus10020016.g ID=Lus10020016.BGIv1.0 annot-version=v1.0 ATGGCAGCGATACCCATCGACTTCCTGGCCCAGAAGATGGAGGCATTTCTGGTAAAAGAAGCAACTTTGTATGGAAAAGCTCGCGACCAAGTGGAGGAAA TGAAGCAAGAACTGATGAGCATGAGGTCGTTCTTGGAGGATGCTGAAGACAACCCAAATGCTACCAACTCCAAATCGAAGCAAACCCAGGTTTCTCAAGT CAGAGATCTAGTCTACGATGTTGAAGACATCATCGACCGGTTTATGTACCACAGGAACAAATGGCAAGGAGAGCGTACATTCATACGGTACGTTAAGCGA ACCGTTGGCTTCCCCAAGTACTTCTGGGAAAGACGACAGATTGCCACCGGCCTCCGACAGCTCAACGGCATGATCAAAGCTATACCCGAGCGGTATCAAC GATATCCAGTTGATGTTCAAAAATCCACCAAGGGTACTGGAGCTGTGTTCAAGGCAGAGTCAGCTTTGTTTCTCAATGAGGAGGATGTTGTTGGGATTGA AGAACCGAAACAAGTGCTCATGGGTTTGCTCACCAATGGAGATTCGGGACGCACAACTATCTCAGTGGTTGGAATGGGTGGCTCTGGTAAGACTACTCTA GTAGCTAACTTGTTCAACTCTCCTGCCGTGAAGCAAAACTTTGATTGTTGTGCTTGGATAACTGTCTCCCAAACTTTCAACATTGATGAACTGTTGAGAA GCTTAATCAAGGAAATCAACAAATCAGAGATAGGAGACAGGATTGATCAAATAACAGATTTGAGTGCCATGAGTTATCGAGAGCTTTTGGAGAAGCTTGT GGGTTATCTAGAGAAGAGAAGTTATCTAGTTGTCCTTGATGATGTATGGGCAACTGATGTTTGGAGCCAAATCAAAGTCTCTCTTCCAAACGGGCACAAA GGTAGCCGAGTCATCATCACAACCCGTATGGACGATATTGCTTCCCATTCATCTTCTCAAGTTGGAAGCCATATTTACCATGTTATGCCACTCAACAAGG ACAAAGCTTGGCAACTGTTTTGCATCAGAGCTTTCTCCTCAAAAAGTTTTAAGAACTGCCCTCCTGAGCTTCAAGCCATAGCCAATCGTTTTGTGGAGAA ATGTGAAGGCTTACCTCTGGCCATTGCTTCTTTAGGTGGGCTCTTGGCTACCAAGACCAGTTCAATAAAGGCATGGACAACGGTCTTTAAAAACATGCAA TGGGAGTTGAACAACAATCAAATGCTTCAACCCATAAAAAGCATCCTTCTTTTGAGCTACAACGATCTTCCATATAGGCTCAAGTATTGCTTCCTGTACT TCGCCCTATTTCCAGAGGACTACAAGATTTGGTGTGATAAGCTTGTTAGGCTATGGATGGCTGAAGGATTCGTGGAAGCAAATAACAATGGGGTGTCACC TGAAGATATTGGAATGGAATACATTAGAGAATTGATTGGTCGGAATATCTTCCAAGCTGTGAGTTGGGACATGTTTGGTAACCATGGCAAGTGTAAGATG CATGATTTGTATAGAGAGATTGCTCTCACAATATCAAAGCAAGAGAAGTTCTGTTCAGTATATGATTTTGGAAATCGTCAAATATTGCCTAAAGAAGGTA ATGAATCGACTCATCGACGTTTGTCCATTCAAAGTGTAGGTAATGAGCAAGAGCTAACAAACTTAGTCGAAGGAATGACTAGCCTTCGCACTTTCCTCTT GTTTGCTAAAAAAAACTCTTTTTCTTGGAGTAAGCTTTCATTGAGGCGTGCTCGACTTGTTCGTATTGTGGATGTGGAAGATGCCCCATTGGAGAAACTA TCTGAGGATAGCTCAGCTCTACTTAACTTGAAGTACTTGGGGTTGAGCAATACTAAGGTGAAGAACCTCCCAAAGACTGTTGGGAAGCTATTCAGCCTTC AAACTCTGGATATTTCAAACACCGATGTTGAAGCTATTCCAAGTGAAATTTTGAAGTTGGTTAGCCTACGCCACTTGTTATCAGGCCATGATATGAGGTT TGGAAAGCTACCCATGAAAGGTGTAAAACTTCCGACAGGTTCAGACATTAGCTCTTTGGAAAACTTACAGACGCTACGATTAGTTGAAGCAAGCGGAGAT TTGATGAAACAGCTCAAGAAGATGGTTCAGCTTGTACAACTTGGGATCACAAACTTGGAAGGACATGCTCAAATGGAGGACCTGTGCTCCTCACTTCAAG GTATGCTTTTATTAAGATGGTTAGTTGTGATGACAAGCAATGAGGATAAACTCCTCCAAATGGATTCACTTAATGAATCCACAGCTCCTCCACTTCAACT TCTTGAATATCTCATCCTGTGTGGGAAATTAAAGAGCTTCCCAGACTGGATCCGATCGCTTCATAGCCTGACAACCATCCGATTGATCTGGAGCAGGCTG CCAGTGGACGAGGATCCAGTAGTACATCTCCAAGGGATGAATAACTTGAGGAATGTGTGGTTTCACAATACATATCAAGGTAAAGATTTGAGCTTTACTT CAGGGTTTAGCAACCTCAGGGCGCTGGCCTTGGCTACTTTGCCTACACTAGAGAGGCTAACAATTGGTGAAGGTGTGATGCCGGTTCTCAGAATCATTTT GATTAGGGACTGTTTAAATCTAAAGGTAATATCAGAAGGTATCAAATCTCTGGCAAAACTCAAAGAGTTGAGGCTCGAGGATGTTTCAGCGCAGCTGGTT GAGCGCATTTGTGGACCTGATCGTGCCAATTTTCGACACATACTCCTCATCTCATGTAAGTACTACTCTGCAACCGGAAGTTACATGAGAGAAAAACTTG TGCTTTAG
AA sequence Show only first row Show all	>Lus10020016 pacid=23156212 polypeptide=Lus10020016 locus=Lus10020016.g ID=Lus10020016.BGIv1.0 annot-version=v1.0 MAAIPIDFLAQKMEAFLVKEATLYGKARDQVEEMKQELMSMRSFLEDAEDNPNATNSKSKQTQVSQVRDLVYDVEDIIDRFMYHRNKWQGERTFIRYVKR TVGFPKYFWERRQIATGLRQLNGMIKAIPERYQRYPVDVQKSTKGTGAVFKAESALFLNEEDVVGIEEPKQVLMGLLTNGDSGRTTISVVGMGGSGKTTL VANLFNSPAVKQNFDCCAWITVSQTFNIDELLRSLIKEINKSEIGDRIDQITDLSAMSYRELLEKLVGYLEKRSYLVVLDDVWATDVWSQIKVSLPNGHK GSRVIITTRMDDIASHSSSQVGSHIYHVMPLNKDKAWQLFCIRAFSSKSFKNCPPELQAIANRFVEKCEGLPLAIASLGGLLATKTSSIKAWTTVFKNMQ WELNNNQMLQPIKSILLLSYNDLPYRLKYCFLYFALFPEDYKIWCDKLVRLWMAEGFVEANNNGVSPEDIGMEYIRELIGRNIFQAVSWDMFGNHGKCKM HDLYREIALTISKQEKFCSVYDFGNRQILPKEGNESTHRRLSIQSVGNEQELTNLVEGMTSLRTFLLFAKKNSFSWSKLSLRRARLVRIVDVEDAPLEKL SEDSSALLNLKYLGLSNTKVKNLPKTVGKLFSLQTLDISNTDVEAIPSEILKLVSLRHLLSGHDMRFGKLPMKGVKLPTGSDISSLENLQTLRLVEASGD LMKQLKKMVQLVQLGITNLEGHAQMEDLCSSLQGMLLLRWLVVMTSNEDKLLQMDSLNESTAPPLQLLEYLILCGKLKSFPDWIRSLHSLTTIRLIWSRL PVDEDPVVHLQGMNNLRNVWFHNTYQGKDLSFTSGFSNLRALALATLPTLERLTIGEGVMPVLRIILIRDCLNLKVISEGIKSLAKLKELRLEDVSAQLV ERICGPDRANFRHILLISCKYYSATGSYMREKLVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10020016 [exp]	0	1
AT1G34300			lectin protein kinase family p...		Lus10028711 [exp]	2.4	0.8707
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10031022 [exp]	3.5	0.8581
AT2G27450		CPA, ATNLP1, NL...	nitrilase-like protein 1 (.1.2...		Lus10020627 [exp]	5.5	0.8712
AT1G55880			Pyridoxal-5'-phosphate-depende...		Lus10032583 [exp]	10.0	0.8716
AT1G21840		UREF	urease accessory protein F (.1...		Lus10027319 [exp]	11.3	0.8547
AT4G09670			Oxidoreductase family protein ...		Lus10005674 [exp]	13.7	0.8847
AT5G49230		HRB1	HYPERSENSITIVE TO RED AND BLUE...		Lus10037819 [exp]	13.8	0.8597
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10041643 [exp]	19.1	0.8749
AT1G71490			Tetratricopeptide repeat (TPR)...		Lus10000043 [exp]	27.4	0.7939
AT1G27000			Protein of unknown function (D...		Lus10036718 [exp]	29.9	0.8564

Compare expression of checked genes

Lus10020016 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.