Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57100 507 / 0 Nucleotide/sugar transporter family protein (.1) AT5G55950 468 / 2e-165 Nucleotide/sugar transporter family protein (.1) AT1G06890 136 / 1e-36 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT2G30460 132 / 5e-35 Nucleotide/sugar transporter family protein (.1.2) AT2G28315 129 / 6e-34 Nucleotide/sugar transporter family protein (.1) AT4G09810 104 / 4e-25 Nucleotide-sugar transporter family protein (.1) AT1G34020 100 / 1e-23 Nucleotide-sugar transporter family protein (.1) AT1G77610 98 / 1e-22 EamA-like transporter family protein (.1) AT1G21070 97 / 2e-22 Nucleotide-sugar transporter family protein (.1) AT1G76670 96 / 9e-22 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015541 [exp] 765 / 0 AT1G62400 623 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10016648 [exp] 459 / 8e-162 AT5G55950 603 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10022563 [exp] 456 / 2e-160 AT5G55950 598 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10037397 [exp] 126 / 3e-32 AT2G28315 527 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10041315 [exp] 124 / 3e-32 AT2G28315 528 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10021464 [exp] 124 / 4e-32 AT2G28315 527 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10008596 [exp] 122 / 3e-31 AT2G30460 569 / 0.0 Nucleotide/sugar transporter family protein (.1.2) Lus10041314 [exp] 116 / 9e-30 AT2G28315 420 / 1e-148 Nucleotide/sugar transporter family protein (.1) Lus10009918 [exp] 104 / 3e-25 AT1G06890 493 / 7e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G072500 [exp] 611 / 0 AT5G57100 499 / 2e-177 Nucleotide/sugar transporter family protein (.1) Potri.018G139500 [exp] 593 / 0 AT5G57100 504 / 1e-179 Nucleotide/sugar transporter family protein (.1) Potri.001G370800 [exp] 442 / 2e-155 AT5G55950 541 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.004G211900 [exp] 140 / 6e-38 AT2G28315 530 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.019G128900 [exp] 139 / 2e-37 AT1G06890 550 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Potri.013G154800 [exp] 135 / 3e-36 AT1G06890 512 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Potri.009G011100 [exp] 134 / 8e-36 AT2G28315 529 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.005G196500 [exp] 107 / 4e-26 AT4G09810 543 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.002G064700 [exp] 101 / 7e-24 AT4G09810 531 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.007G077900 [exp] 100 / 2e-23 AT4G39390 521 / 0.0 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10020017 pacid=23156166 polypeptide=Lus10020017 locus=Lus10020017.g ID=Lus10020017.BGIv1.0 annot-version=v1.0 ATGTTGAGTAGCCGTGAGTTTCTCAATTTCTTCGCAAGGAAAGATGCGAGGAAGATACTTAAGCGCAAGGACAGTGACGCCGGTGAACCAGGAAGGGCTT TGGAAGAACTGAGATCCTCTTTGTTTAACAAATTCCGCTCACCGGAGAATGCGAAGCGACATGACCAGCGCCGTTGTGGTCCAGTTGCTGCTCTTACATT CAACTTCATCATAGCGGTTGGCATTATCTTCATTAACAAATGGGTGTTTCAAGGAGTTGGTTTCCGGTATCCAATCTGCCTGAGTTTTATCCACTACGCA ATAAGCTGGATTTTGATGGCCATTTTAAAAGCCATGTCCATTCTCCCAGCACCGCCTCCAACGAAAGCAAATCGCTTGACTTTGTTTACTCTTGGTTTTG TAATGTCGCTCTCTACTGGCCTGGCTAATGTCAGCTTGAAGTATAATAGTGTGGGTTTCTACCAGATGGCTAAGATTGCTGTTACTCCTTCCATTGTTCT CGCTCAATTCATATGGTTTAAAAAGACTGTCTCTTTTTCCAAGGTGGTTGCACTTACAGTTGCCTCTACTGGAGTTGCGCTAGCTACAGTTACTGACTTG CAGTTTAGTCTCTTTGGTGCATGCGTAGCACTGGCCTGGATAATCCCTAGTGCAGTGAACAAAATCATGTGGTCAACTATGCAACAGCGAGACAACTGGA CAGCCTTAGCGTTGATGTGGAAGACAACACCCATCACTTTGATTTTCCTTGCTGCTTTGATTCCCTTCTTCGACCCCGCTGGTGTATTCTCCTATGACTG GAACTTGAGTAACACGGCATTGATAATCACCTCTGCGTTCTTTGGATTTTTACTTCAGTGGTCCGGTGCCTTGGCCCTCGGGGCGACATCTGCAATATCT CATGTTGTACTTGGTCAATTTAAGACGTGCGTTGTGCTGCTGGGGAACTACTACATTTTCGGGGCGAATCCAGGAGTGACCAGCATCTTTGGTGCACTCA TCGCAATCGGCGGGATGTCTGCTTTCACGTATCTTAATCTACTACAAAATGCCAAATCCCAAACAGCACCACAGAAATCGCCGGCGAAGGACAAATCCAG GTTGAACAACGAGAACGGTGGCAACACCAGTGATGGATATGGCGAGGAATCTGTGTAA
AA sequence Show only first row Show all	>Lus10020017 pacid=23156166 polypeptide=Lus10020017 locus=Lus10020017.g ID=Lus10020017.BGIv1.0 annot-version=v1.0 MLSSREFLNFFARKDARKILKRKDSDAGEPGRALEELRSSLFNKFRSPENAKRHDQRRCGPVAALTFNFIIAVGIIFINKWVFQGVGFRYPICLSFIHYA ISWILMAILKAMSILPAPPPTKANRLTLFTLGFVMSLSTGLANVSLKYNSVGFYQMAKIAVTPSIVLAQFIWFKKTVSFSKVVALTVASTGVALATVTDL QFSLFGACVALAWIIPSAVNKIMWSTMQQRDNWTALALMWKTTPITLIFLAALIPFFDPAGVFSYDWNLSNTALIITSAFFGFLLQWSGALALGATSAIS HVVLGQFKTCVVLLGNYYIFGANPGVTSIFGALIAIGGMSAFTYLNLLQNAKSQTAPQKSPAKDKSRLNNENGGNTSDGYGEESV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57100			Nucleotide/sugar transporter f...		Lus10020017 [exp]	0	1
AT5G52870		MAKR5	MEMBRANE-ASSOCIATED KINASE REG...		Lus10039306 [exp]	1.4	0.9071
AT3G29310			calmodulin-binding protein-rel...		Lus10038064 [exp]	1.7	0.9175
AT1G11820			O-Glycosyl hydrolases family 1...		Lus10031456 [exp]	9.6	0.8706
AT2G38370			Plant protein of unknown funct...		Lus10025249 [exp]	10.2	0.8926
AT1G23220			Dynein light chain type 1 fami...		Lus10034609 [exp]	10.3	0.8373
AT3G53540			unknown protein		Lus10025296 [exp]	10.7	0.8757
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10034747 [exp]	15.0	0.8657
AT4G27760		FEY3, FEY	FOREVER YOUNG, NAD(P)-binding ...		Lus10009112 [exp]	15.7	0.8511
AT4G20940			Leucine-rich receptor-like pro...		Lus10023260 [exp]	18.0	0.8916
AT5G58090			O-Glycosyl hydrolases family 1...		Lus10040579 [exp]	18.1	0.8848

Compare expression of checked genes

Lus10020017 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.