Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05530 366 / 3e-129 SDRA, IBR1 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) AT2G29150 115 / 7e-31 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G06060 109 / 1e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29290 107 / 7e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29260 104 / 2e-26 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29360 103 / 2e-26 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29370 101 / 2e-25 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07440 99 / 8e-25 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G26760 100 / 9e-25 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29340 97 / 4e-24 NAD-dependent epimerase/dehydratase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015542 [exp] 457 / 7e-165 AT4G05530 385 / 2e-136 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Lus10001430 [exp] 401 / 6e-143 AT4G05530 369 / 2e-130 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Lus10001636 [exp] 200 / 2e-65 AT4G05530 174 / 9e-56 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Lus10040735 [exp] 120 / 2e-32 AT5G06060 341 / 4e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016498 [exp] 119 / 3e-32 AT5G06060 351 / 7e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040271 [exp] 117 / 3e-31 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040737 [exp] 115 / 6e-31 AT2G29350 332 / 3e-115 senescence-associated gene 13 (.1.2.3) Lus10016499 [exp] 114 / 2e-30 AT5G06060 337 / 2e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040733 [exp] 112 / 2e-29 AT5G06060 346 / 5e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G022500 [exp] 392 / 2e-139 AT4G05530 373 / 5e-132 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Potri.011G022400 [exp] 374 / 2e-132 AT4G05530 330 / 4e-115 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Potri.006G089800 [exp] 110 / 7e-29 AT2G29150 307 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.014G135510 [exp] 110 / 1e-28 AT4G03140 400 / 8e-141 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 108 / 5e-28 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206900 [exp] 104 / 1e-26 AT2G47140 229 / 3e-75 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G142600 [exp] 100 / 2e-25 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.006G025400 [exp] 100 / 4e-25 AT3G12800 427 / 3e-152 short-chain dehydrogenase-reductase B (.1) Potri.005G106100 [exp] 99 / 1e-24 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026000 [exp] 99 / 2e-24 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10020019 pacid=23156141 polypeptide=Lus10020019 locus=Lus10020019.g ID=Lus10020019.BGIv1.0 annot-version=v1.0 ATGAGCAAGATCGGAAGACGATTCGAGGGTAAGGTCGCGATCGTCACCGCTTCCACTCAGGGTATTGGGTTTTCCATCGCTCAGCGAGTTGGACTTGAAG GCGCCTCTGTTGTTATCTCCTCCCGCAAACAGCATAATGTAGATGAGGCAGTTGCGAAGCTCCGGGAACAAGGTATCCAAGCGTTGGGTGTTGTTTGCCA TGTCTCTAATGCGGAACAGAGAAAGAATCTCATCGACAAAACTGTTGAGAAATATGGAAAAATAGATGTGGTGGTATCCAATGCTGCTGCCAACCCCTCG ACCGAGTCCATCGTAGAAACCAAAGAATCAGTCCTCGACAAGTTGTGGGAAATCAACGTCAAAGCATCTATCCTTCTGTTGAAGGATGCAGCTCCATACA TGCAAAGGGGTTCTTCAGTTGTTCTGGTTGCCTCAATTGCTGGCTATGACCCACCAGCGTCAATGGCTATGTATGGGGTCACGAAGACTGCCCTTCTTGG CCTCACTAAGGCACTTGCAGCCGAGATGGCGCCTGAGGTTCGAGTAAACTGTATAGCCCCGGGTTTTGTGCCAACACATTTTGCTTCATTCCTTACCAAG AACGATGAATTGAGGAAGTCCCTAGAAGAGAAGACCTTGCTGAATAGGTTGGGAACCACAGAAGACATGGGAGCCGCAGTAGCTTTTTTGGCATCAGACG ATGCTTCTTACATAACTGGTGAAACATTAGTGGTGGCTGGTGGGATGTCATCTCGGCTTTAA
AA sequence Show only first row Show all	>Lus10020019 pacid=23156141 polypeptide=Lus10020019 locus=Lus10020019.g ID=Lus10020019.BGIv1.0 annot-version=v1.0 MSKIGRRFEGKVAIVTASTQGIGFSIAQRVGLEGASVVISSRKQHNVDEAVAKLREQGIQALGVVCHVSNAEQRKNLIDKTVEKYGKIDVVVSNAAANPS TESIVETKESVLDKLWEINVKASILLLKDAAPYMQRGSSVVLVASIAGYDPPASMAMYGVTKTALLGLTKALAAEMAPEVRVNCIAPGFVPTHFASFLTK NDELRKSLEEKTLLNRLGTTEDMGAAVAFLASDDASYITGETLVVAGGMSSRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Lus10020019 [exp]	0	1
AT1G01490			Heavy metal transport/detoxifi...		Lus10007911 [exp]	2.2	0.9214
AT1G17455		ELF4-L4	ELF4-like 4 (.1.2)		Lus10000408 [exp]	3.0	0.9236
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10020999 [exp]	3.3	0.9126
AT4G15800		RALFL33	ralf-like 33 (.1)		Lus10015172 [exp]	3.5	0.9110
AT1G30110		ATNUDX25	nudix hydrolase homolog 25 (.1...		Lus10003714 [exp]	3.5	0.9193
					Lus10017210 [exp]	5.3	0.9295
AT5G43280		ATDCI1	"delta\(3,5\),delta\(2,4\)-die...		Lus10011336 [exp]	6.2	0.9109
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10018992 [exp]	6.6	0.9252
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Lus10014615 [exp]	7.0	0.9184
AT5G09620			Octicosapeptide/Phox/Bem1p fam...		Lus10035641 [exp]	8.3	0.9027

Compare expression of checked genes

Lus10020019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.