Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21440 296 / 2e-99 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT4G05100 271 / 8e-90 MYB ATMYB74 myb domain protein 74 (.1) AT4G28110 242 / 5e-79 MYB ATMYB41 myb domain protein 41 (.1) AT5G16770 228 / 1e-72 MYB ATMYB9 myb domain protein 9 (.1.2) AT5G54230 227 / 2e-72 MYB ATMYB49 myb domain protein 49 (.1) AT3G02940 225 / 1e-71 MYB ATMYB107 myb domain protein 107 (.1) AT1G34670 225 / 4e-71 MYB ATMYB93 myb domain protein 93 (.1) AT5G15310 221 / 2e-70 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT3G01140 216 / 3e-67 MYB NOK, ATMYB106 NOECK, myb domain protein 106 (.1) AT5G10280 214 / 4e-67 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006740 [exp] 453 / 1e-159 AT4G21440 317 / 6e-106 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10018418 [exp] 318 / 9e-108 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10002593 [exp] 298 / 4e-100 AT4G21440 330 / 2e-112 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10039743 [exp] 263 / 9e-88 AT4G21440 296 / 2e-100 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10033003 [exp] 223 / 4e-70 AT5G15310 323 / 2e-109 myb domain protein 16 (.1.2) Lus10036472 [exp] 215 / 8e-68 AT5G10280 307 / 1e-103 myb domain protein 92 (.1) Lus10041142 [exp] 214 / 2e-67 AT1G34670 315 / 2e-106 myb domain protein 93 (.1) Lus10026620 [exp] 212 / 7e-67 AT3G01140 294 / 2e-98 NOECK, myb domain protein 106 (.1) Lus10014784 [exp] 205 / 3e-64 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G033100 [exp] 312 / 3e-105 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.011G041600 [exp] 271 / 7e-89 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.019G118200 [exp] 270 / 1e-88 AT4G05100 278 / 7e-92 myb domain protein 74 (.1) Potri.001G408700 [exp] 256 / 1e-83 AT4G21440 275 / 1e-90 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.011G125900 [exp] 254 / 6e-83 AT4G21440 281 / 1e-92 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.013G148600 [exp] 249 / 2e-80 AT4G21440 269 / 4e-88 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.005G164900 [exp] 223 / 8e-71 AT1G34670 309 / 7e-104 myb domain protein 93 (.1) Potri.017G086300 [exp] 224 / 2e-70 AT5G15310 343 / 6e-117 myb domain protein 16 (.1.2) Potri.005G074500 [exp] 223 / 2e-70 AT1G34670 290 / 1e-96 myb domain protein 93 (.1) Potri.007G093900 [exp] 220 / 1e-69 AT1G34670 289 / 6e-96 myb domain protein 93 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10020085 pacid=23156211 polypeptide=Lus10020085 locus=Lus10020085.g ID=Lus10020085.BGIv1.0 annot-version=v1.0 ATGGGAAGATCGCCCTTAAGAACTTGTGAAAAGAATGGGTTGAAGAAAGGGCCATGGACTCCCGAGGAAGACCAAAAGCTCATCGATTACATTCAACTTC ATGGCTATGGCAATTGGCGCACCCTCCCTTTAAATGCCGGGTTACAAAGGTGTGGTAAAAGTTGTCGTCTTCGGTGGACTAACTATCTTCGACCCGATAT CAAGAGAGGCCGGTTCTCGTTCGAAGAAGAGGAGGCTATTATTCAGCTTCATGGTATTCTCAGAAACAAGTGGTCGGCGATTGCATCTCGCTTGCCAGGA AGGACGGACAACGAGATTAAAAACTACTGGAACACACACATTCGAAAGAGACTGTTGAGAATGGGGATTGATCCGGTAACGCACAATCCAAGACTCGATC TTTTAGACCTCTCCGCCATTTTGGGCTCATCCTTTTCCTCCTCGCAGCCTAACATCTCGAGGTTGCTTTGCTTGGTCAACCCTGAAATTCTACACCTCGC CACTTCCCTCGTCTCATCATCATCATCACCCGAAACCCAACTCCAAAACCAAACCCAAACCCAAACCGGAGGAATTTATGACCAGCACTACCAACCGATG GTCAACCCTGAGTTTCAGGACATGACAGCTACTACACTGGCCACCACCGCAACCATTACAAATGTGCCACGTGTCGAGGTGGGCCCTTCTGATAATTGGC AGAGAAGTTATACGTCGGACAGCTACAACGATCATCTTCACGACTACTACCCCGGGACGTCGTCGTTTGATGATCACCAAACGGGCAATACTATTATGGA CTTGTCAGCGGCGGCGGCGTCCGTGTTTTCAACGCCGTCGTCGAGCCCGACGCGGTTGAACTCCAACTCAACTTTGAATAATTTCAACGCCGGTAGTAGT ACGGAGGACGAGAGAGATAGCTATTGTAGTAATATGTTGAGGTTTGAGATGCCTCCTAGTATTTTGGATGTAAGTAATTTCATGTAA
AA sequence Show only first row Show all	>Lus10020085 pacid=23156211 polypeptide=Lus10020085 locus=Lus10020085.g ID=Lus10020085.BGIv1.0 annot-version=v1.0 MGRSPLRTCEKNGLKKGPWTPEEDQKLIDYIQLHGYGNWRTLPLNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEEAIIQLHGILRNKWSAIASRLPG RTDNEIKNYWNTHIRKRLLRMGIDPVTHNPRLDLLDLSAILGSSFSSSQPNISRLLCLVNPEILHLATSLVSSSSSPETQLQNQTQTQTGGIYDQHYQPM VNPEFQDMTATTLATTATITNVPRVEVGPSDNWQRSYTSDSYNDHLHDYYPGTSSFDDHQTGNTIMDLSAAAASVFSTPSSSPTRLNSNSTLNNFNAGSS TEDERDSYCSNMLRFEMPPSILDVSNFM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10020085 [exp]	0	1
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10015643 [exp]	5.7	0.7590
AT3G25610			ATPase E1-E2 type family prote...		Lus10017901 [exp]	7.3	0.7219
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Lus10031144 [exp]	8.9	0.7570
					Lus10011203 [exp]	11.0	0.7714
AT5G05390		LAC12	laccase 12 (.1)		Lus10009841 [exp]	21.6	0.7669
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10042334 [exp]	36.7	0.7485
AT4G26120			Ankyrin repeat family protein ...		Lus10024842 [exp]	56.8	0.6882
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10026419 [exp]	70.6	0.6889
AT1G11940			Core-2/I-branching beta-1,6-N-...		Lus10030027 [exp]	72.3	0.6813
AT4G37700			unknown protein		Lus10011707 [exp]	75.7	0.7192

Compare expression of checked genes

Lus10020085 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.