Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06110 627 / 0 DnaJ domain ;Myb-like DNA-binding domain (.1.2) AT3G11450 382 / 4e-124 DnaJ domain ;Myb-like DNA-binding domain (.1) AT5G45420 91 / 7e-20 MYB maMYB membrane anchored MYB, Duplicated homeodomain-like superfamily protein (.1) AT1G74250 72 / 4e-13 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G59725 51 / 1e-06 DNAJ heat shock family protein (.1) AT5G16650 47 / 3e-06 Chaperone DnaJ-domain superfamily protein (.1) AT4G39250 46 / 3e-06 MYB RSM2, ATRL1 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) AT1G10350 49 / 7e-06 DNAJ heat shock family protein (.1) AT5G25530 49 / 9e-06 DNAJ heat shock family protein (.1) AT2G41000 47 / 2e-05 Chaperone DnaJ-domain superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020118 [exp] 1035 / 0 AT5G06110 749 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1.2) Lus10026919 [exp] 1003 / 0 AT5G06110 752 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1.2) Lus10026920 [exp] 881 / 0 AT5G06110 681 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1.2) Lus10034688 [exp] 71 / 1e-12 AT1G74250 468 / 5e-158 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10039841 [exp] 69 / 3e-12 AT5G45420 249 / 2e-81 membrane anchored MYB, Duplicated homeodomain-like superfamily protein (.1) Lus10018605 [exp] 67 / 1e-11 AT5G45420 247 / 7e-81 membrane anchored MYB, Duplicated homeodomain-like superfamily protein (.1) Lus10017846 [exp] 67 / 4e-11 AT1G74250 464 / 1e-156 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10036429 [exp] 51 / 6e-08 AT5G45420 93 / 4e-24 membrane anchored MYB, Duplicated homeodomain-like superfamily protein (.1) Lus10013981 [exp] 52 / 1e-06 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G035800 [exp] 798 / 0 AT3G11450 679 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1) Potri.003G190000 [exp] 783 / 0 AT3G11450 663 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1) Potri.001G147000 [exp] 87 / 1e-18 AT5G45420 234 / 1e-75 membrane anchored MYB, Duplicated homeodomain-like superfamily protein (.1) Potri.009G018400 [exp] 73 / 3e-13 AT1G74250 460 / 2e-155 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.013G058100 [exp] 54 / 1e-07 AT5G18140 264 / 1e-86 Chaperone DnaJ-domain superfamily protein (.1) Potri.013G078200 [exp] 50 / 3e-07 AT5G16650 198 / 6e-67 Chaperone DnaJ-domain superfamily protein (.1) Potri.019G041400 [exp] 49 / 6e-07 AT5G16650 193 / 5e-65 Chaperone DnaJ-domain superfamily protein (.1) Potri.007G076200 [exp] 51 / 1e-06 AT5G08520 293 / 6e-99 Duplicated homeodomain-like superfamily protein (.1) Potri.006G246700 [exp] 51 / 1e-06 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.010G035000 [exp] 51 / 1e-06 AT1G10350 429 / 1e-151 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10020117 pacid=23142080 polypeptide=Lus10020117 locus=Lus10020117.g ID=Lus10020117.BGIv1.0 annot-version=v1.0 ATGATGGTTCGGAACCCTCTGCGGCTTATTTCATACTCACAAGAACTTGTGGATGGTCAGCCAGTATTTGTATCTTCAAATTGCTTTCCTGTAAAAGCTA AAAATTATGATCCTGCGGGACATGCGTTCCATGCTGCTGCTCTTAAACTCGTTGGACATGAGGATGCTGTGCATAATAAAGATGATAGTGTCTCCAAGGA CAAGGAACAGACCCACATGCCATCGGCCGAATCCTACAGCAGTAAAGGGAAAAAGAAAGGTACTGGAGACAATCAACAAGATCACTATGCTTTACTAGGG TTGAGCCATCTGAGATACCTAGCCACAGAAGAGCAGATACGGAAGAGTTATCGTGAGGTTGCTTTGAAGTATCATCCTGACAAACAGGCTGCACTTCTTC TTGCCGAGGAAACTGAGGCTGCGAAACAAGCTAAAAAGGAACAAATAGAAAGTCATTTCAAAGCTATCCAGGAAGCGTATGAGGCTCTGATTGATCCGGT GAAGAGAAGAGTTTATGATTCTACTGACGAGTTTGATGATGAAGTTCCCACTGATTGTGCACCACAGGACTTCTTTAAAGTGTTTGGGCCAGCATTTGTG AGGAATGGTCGTTGGTCTGTTAGCCAGCCAGTGCCACCATTGGGTGATGATGCCACTCCTTTTAAAGAAGTGGACATCTTTTATGATTTTTGGTATAGCT TTAAAAGCTGGAGAGAATTCCCCCATGAAGATGAGTTCGATCTTGAGGATGCTGAATCTCGTGACCACAAGAGGTGGATGGAGAGGCAAAATGCAAAATT GTCTGAAAAGGCTAGAAAAGAAGACTATGCCCGTATTCGTACCCTAGTTGACAATGCCTACAGAAGAGATCCGAGAATACAGAAGAGAAAGGAAGAGGAG AAAGCTGAGAAGCAGCGTAAAAAAGAGGCCAAATATTTGGCGAAAAAATTGCAGGAGGTAGAAGCTGCAAAGGCTGCGGAAGAGGAGCAACGCAGAAAAG AGGAGGAGGGAAAGCGTGCTGCTGAAGCGGCTTTGTTACAAAAGAAAGTGAAGGAGAAGGAGAAGAAACTTTTAAGGAAAGAGCGTGCTCGTCTTCGAAC ACTTTCAGCTCCGGTCTTGGCCGGCCGTTTTCTTGGCGTTACTGAAGATGATGTCGAAAATCTATGTATGTCGCTTGACACCGAGCAAATGAGAAGTTTA TGTGAAAAGATGGAAGGTCAAGAGTCATTAGAGAAAGCCAGTCTCTTGAAAAATGCTTGTGGACATGAACAAGAAGCTGAGAATCATAAGGGAGACCAGA AGAAGATGGCTCAGCAGAACGGCCCTGTGTCAAATGGGGGTTTCCATGGCAGCAGTTACCGCAGCAAAGAGAAACCTTGGCTTAGAGAAGAAATCGAGCT GCTGAGAAAAGGAATGCTAAAATTTCCTAAGGGTACTTCTCGCCGTTGGGAGGTTATCTCTGATTATATCGGCACTGGGAGATCTGTTGAAGAAATCATC AAGGCAACTAAAACAGTTCTCCTCCAAAAGCCTGACTCTGCCAAAGCTTTTGACTCCTTCCTAGAGAAGAGGAAACCTGCGGTATCCATAGCTTCTCCAC TGACTACAAGAGAGGAAGTGGAGCTGGTGAATCCTCAGAGCTCCGAAGACAATGCTGCAAAGGTGGACAATACTGAAGAATCACCAAGTGGGAGTTCAGA CAACCCGAAAACTGATGATGGAAATTCTGCAACAAATACAACGCCATCTTCTGCCTCTTCTTCTTCTTCGTCTTCAGAGCAGGATGTATGGTCTGCTGTT CAGGAGAGGGCGCTTGTGCAGGCACTTAAAACCTTTCCAAAGGATGCCAATCAACGATGGGAGCGAGTCGCAGCTGCGGTACCTGGGAAGACTGTAAACC AGTGCAAGAAGAAATTTGCTTTGCTGAAGGAGAGCTTTAGAAGCAAGAAAAGTACTGCCTAG
AA sequence Show only first row Show all	>Lus10020117 pacid=23142080 polypeptide=Lus10020117 locus=Lus10020117.g ID=Lus10020117.BGIv1.0 annot-version=v1.0 MMVRNPLRLISYSQELVDGQPVFVSSNCFPVKAKNYDPAGHAFHAAALKLVGHEDAVHNKDDSVSKDKEQTHMPSAESYSSKGKKKGTGDNQQDHYALLG LSHLRYLATEEQIRKSYREVALKYHPDKQAALLLAEETEAAKQAKKEQIESHFKAIQEAYEALIDPVKRRVYDSTDEFDDEVPTDCAPQDFFKVFGPAFV RNGRWSVSQPVPPLGDDATPFKEVDIFYDFWYSFKSWREFPHEDEFDLEDAESRDHKRWMERQNAKLSEKARKEDYARIRTLVDNAYRRDPRIQKRKEEE KAEKQRKKEAKYLAKKLQEVEAAKAAEEEQRRKEEEGKRAAEAALLQKKVKEKEKKLLRKERARLRTLSAPVLAGRFLGVTEDDVENLCMSLDTEQMRSL CEKMEGQESLEKASLLKNACGHEQEAENHKGDQKKMAQQNGPVSNGGFHGSSYRSKEKPWLREEIELLRKGMLKFPKGTSRRWEVISDYIGTGRSVEEII KATKTVLLQKPDSAKAFDSFLEKRKPAVSIASPLTTREEVELVNPQSSEDNAAKVDNTEESPSGSSDNPKTDDGNSATNTTPSSASSSSSSSEQDVWSAV QERALVQALKTFPKDANQRWERVAAAVPGKTVNQCKKKFALLKESFRSKKSTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10020117 [exp]	0	1
AT1G49600		ATRBP47A	RNA-binding protein 47A (.1)		Lus10012070 [exp]	6.3	0.8881
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Lus10021059 [exp]	8.1	0.8921
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015204 [exp]	9.4	0.9078
AT5G09450			Tetratricopeptide repeat (TPR)...		Lus10029043 [exp]	10.0	0.8596
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Lus10015806 [exp]	14.1	0.8994
AT4G37190			unknown protein		Lus10001001 [exp]	15.5	0.8704
AT3G09630			Ribosomal protein L4/L1 family...		Lus10014431 [exp]	19.1	0.8967
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10026920 [exp]	20.8	0.8699
AT4G19710		AK-HSDHII, AK-H...	aspartate kinase-homoserine de...		Lus10030339 [exp]	21.2	0.8905
AT5G49560			Putative methyltransferase fam...		Lus10026017 [exp]	24.5	0.8420

Compare expression of checked genes

Lus10020117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.