Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 365 / 3e-107 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G69550 333 / 3e-95 disease resistance protein (TIR-NBS-LRR class) (.1) AT1G27180 332 / 2e-94 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 321 / 3e-91 transmembrane receptors;ATP binding (.1.2) AT5G17680 299 / 6e-84 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G16890 289 / 1e-80 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G46270 276 / 1e-76 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41550 273 / 4e-76 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46260 272 / 4e-75 disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41540 270 / 5e-75 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037406 [exp] 1483 / 0 AT5G36930 395 / 5e-116 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10035674 [exp] 1342 / 0 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10017143 [exp] 1329 / 0 AT1G27180 387 / 6e-116 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10042714 [exp] 1261 / 0 AT5G36930 411 / 3e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004115 [exp] 1046 / 0 AT5G27970 689 / 0.0 ARM repeat superfamily protein (.1.2) Lus10010574 [exp] 1006 / 0 AT5G36930 397 / 4e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10029628 [exp] 975 / 0 AT1G27180 462 / 1e-138 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10004911 [exp] 967 / 0 AT1G27170 387 / 5e-115 transmembrane receptors;ATP binding (.1.2) Lus10023272 [exp] 959 / 0 AT5G36930 423 / 4e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G001602 [exp] 413 / 2e-125 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.012G053200 [exp] 411 / 8e-123 AT1G27170 1187 / 0.0 transmembrane receptors;ATP binding (.1.2) Potri.019G001600 [exp] 399 / 3e-120 AT5G36930 721 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 395 / 1e-118 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 394 / 4e-118 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 392 / 1e-117 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 388 / 1e-117 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 386 / 5e-117 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T005501 [exp] 390 / 7e-117 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.012G135700 [exp] 387 / 3e-116 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10020238 pacid=23144053 polypeptide=Lus10020238 locus=Lus10020238.g ID=Lus10020238.BGIv1.0 annot-version=v1.0 ATGGAGCAGAAGCTCGTGCACTTCGGCGAAGGAACAACAGTTCCCAATGCTGCTTCATCGGCAGAACAACAACATGTCGAGTACGAGGTTTTCTTGAGCT TTAGAGGGCCTGATGTTCGCAAAAGCTTTGCGGACTTTCTCTACAGCTATTTGGTCCATTCCAAGATCCGTACCTTTAGGGACGAGGAAGAGCTTCGGAA GGGGGATACCATTGCACATTCCCTGGTCCAGGCTATCACTGAATCGAAGATTTACATTCCTATTTTATCAGAGAGCTATGCTTCTAGCAAATGGTGCCTC CAAGAACTAGCTAAGATGGTTGAGTGTTGCAGGAAAGAGAAGGGACATATCATATTGCCTGTTTTCTTTGTAGACCCCAGAGATGTGCGGCGTCAAGCGG GTCCATATAAGGAGGCATTTGAACTGCATTGTAAGAAACATGACCCCATTATCGTACAAGAATGGAGGTCAGCTCTCAAAGAAGTTGGAGAAATGAAAGG ATGGCATGTTTCCGAATCAGTCGGACACGGAGCTGTCGTAGATGAAATTTTTTCTGAGGTTGAGTTGCACCTGAGGATTAACTATACCTTAGTAATTGAG GAGTTGGTAGGAATTGATTTTCATGTGCAAGAAGTGATGAGATTGTTGAATTTAGACTCTAGAGATGGGAAAATTGTTGGGATTCAAGGCATTGGTGGCA TTGGTAAAACTACTATAGCCAAGGCCGTCTATGACGAGATTTCCACAAGCTTCAGTCGGTGTTGTTTCCTAGAGAATACACAAGAACTATTGTTGAAAAA TGACGGCATAGTGTCTTTACAGAATAAGCTCATTTCTAGCATTTTGAGGGATGATGTTCAGGTTAAAGATGCTAGTGAAGGGGTCAGAATGATAAGAGAG AGGGTCTGCAAATATAAAGTCTTGGTTGTTCTTGATGATGTAGATGATAAGTTTGAGTTTGGCCAAATATTGGGAAAATTAGGTAATTTTTCCTCAGAGA GTAGATTTGTCATTACAACAAGAAACAAACGAGTTATAGAGGTCCTCCCAGAATACAAGTTGTACGAACCAAAAGAAATGAGTCATGATCATTCTCTTCA ACTTTTTAGCAGACATGCTTTCTGGAAGGATTCCCCACCAGAAGATTATGCAGCCCTATGTGATGAATTTGTGAAAGTTTCAGCAAATCTGCCTTTGGCT CTTAAGGTTATAGGGTCGCTCATGTTTGGTAGGAATAGACAGTTTTGGGAAGAAAAGTTGATGCAACTAAAAAAAGTGCCTGGTACTATTGATAAGGTGC AGGAAAGATTGAAGATTAGCTACAATGAGTTGACCTATGATCAAAGACAAATCTTTCTCGACATAGCCTGCTTTTTCATTGGAGAGGATAAAGAATTGCC GATGCATATGTGGAATGATTGCGAGTTTTATCCAGAAAGTGGAATCAGGACTCTTATTCTTAGGTCCTTGATAAAACTCGACAGGACAAATCGGTTATGG ATGCATGATCATCTTAGAGACCTCGGTAGAGCTATTGTTATAGAGGAAGATGTTGAAAATCCATACAAGCGCAGCAGGATCTGGACAAAAGAAGATGCTA TTCGCATGTTGAAAAATAAAAAGGGAACTGATCGAGTGCGAATGCTTAGGGTTGATGCGGAAAGCAGCGATCCTGTTTTCCTCACAAACAAATGTTTTGA AGGGTTGTCGAACTTGAGGTACCTTGACATAAAGCATCCCAAAATGTCGTTGAATGGGTTCTTCAGTGGAATACTTCCGTCTATGTGTTGGATTAAGCTC TCTAGCATGTCTATCCCGTTTAATCTCAACTTGAAGAATGTTGTAATTCTCGAGTTACGGGGTTGGGATGTAGTTGATGGTTGGCGAGGATGGAAGAGTG TTAAGTCGGCAAGCAAGCTGAAGGTTATAAATCTACATGGTTGCTTTAACTTAACAAGCGTTCCTGACCTTTCCCACTGTAGAAGCCTAGAGTCGATTGA TCTCACTCTATGTCGACGCATGATGGGGAAACTCAATATCAGTGCTTTCAGGAATCTGAAAGTGGTCATGCTTCAGGATACTAAAATAGCATTAACAGGC GACATGCGAAAGCTTCAAAAACTCGAAGAGATTAAGACGGGGAAATTGGCATGGGGAGCTGAAGAAGTACCAGAGCTACCCACAAGCTTAAAACGCATAA CCATCTCATCTCCTAGGATCCGAAATCTTCTGGAGCTTAAAGACCTGGAAGAGCTTTGCTTTGAGAACTGTGATGAGGGTCCTGAGATTCCTGGAGATAT ATGGCAGCTGTCGAAGTTAAAGACACTGAAGACGATCAAGTGCAGCTGCGAAGGTAGCCTACTGTCGAATCAAGACGGTATCCTCCCATCATCTCTAACC TGCCTTGTCGTTGACTGGACTGGGGGTCTGACTAGACTTCCGAATCTCGGAAATCTGATTAATTTGATGGAACTACGGCTGAGCCAGTTCAGGGCAAGTG AAATTCACGGTCTTGGGAAGCTGACAGTGCTGGAAGCACTTGAAATATCTGAATCTATGAGTTTAGATCATCTCCAGGGCCTCGAGGATCTCGTGCACCT GAAAGAGTTGACTTTGAAAAGTTGTGGACTAAAGGGTCGTCTTCCCAATCTGTCGAAGCTGATCAAGTTGCACAAGCTAGTGATTGTTAACTGTCCGTTG CTCTCCGAAATTCAGGGACTCGGTGAATTGAAGCGGTCTTTGTTGCATCTGGAAGTAAGTTGTTGCGACTCGCTAGCCGATATATGTGGGCTTGAATCTC TGGAAGGACTGGAAAGTTTGACATTGGAGTCAGCAACACATAAACCATTTCCAGACCTCTCACGCCTCCAGAACCTAAAACAACTGTGCATTGCTGGGTG GAGACAGTTACCTGAGATCCTAGGACTTGAACGATTAAAATCGTTACGATCCCTGGAAATGAAGGCCTGCAAATCGCTAATGAGGTTGCCTAATCTCTTG GGTCTTGAAAACTTGGAGACGCTGGATGTTAGTGACTGCATACAGTTGGCTGATGTCACAGGCCTCGACAGATTAAAATCGTTGCAAAAGCTTAACATGT CGAATTGTTCGGCGATTGAGGAGTTGCCTGATATATCTGGCATGAAGAGTCTGAACGTTTTAGATGTTAGTGAATGCATCAAGCTTGTTATGGTCAACGG TCTAGTGAAATTGGATTCATTGGAAGAGTTATACATGGTTGATTGCAAGTCGATTCAGGAGTTACCAAATATGTCCCATCTCAGGAATCTGATGAAACTA AATCTCAAGGGATGCAAAAAATTGAAGAATGTTGAAGGACTTGAGAAATTAAGTCTCTTGTGGTTTGTGCGTATGGGGAAAAGGTTACATCTCAAGTATC CCTTGAAAACGGTTGCGTGGGCTTCGAGGGAAGTGGTCGTATCACTGTTTGGTATGGCTTTCATGACAGAACGTGATGAAATTACTACCTGGTATCATAA ACAGATAAAGGGTGTACGGTTGTGA
AA sequence Show only first row Show all	>Lus10020238 pacid=23144053 polypeptide=Lus10020238 locus=Lus10020238.g ID=Lus10020238.BGIv1.0 annot-version=v1.0 MEQKLVHFGEGTTVPNAASSAEQQHVEYEVFLSFRGPDVRKSFADFLYSYLVHSKIRTFRDEEELRKGDTIAHSLVQAITESKIYIPILSESYASSKWCL QELAKMVECCRKEKGHIILPVFFVDPRDVRRQAGPYKEAFELHCKKHDPIIVQEWRSALKEVGEMKGWHVSESVGHGAVVDEIFSEVELHLRINYTLVIE ELVGIDFHVQEVMRLLNLDSRDGKIVGIQGIGGIGKTTIAKAVYDEISTSFSRCCFLENTQELLLKNDGIVSLQNKLISSILRDDVQVKDASEGVRMIRE RVCKYKVLVVLDDVDDKFEFGQILGKLGNFSSESRFVITTRNKRVIEVLPEYKLYEPKEMSHDHSLQLFSRHAFWKDSPPEDYAALCDEFVKVSANLPLA LKVIGSLMFGRNRQFWEEKLMQLKKVPGTIDKVQERLKISYNELTYDQRQIFLDIACFFIGEDKELPMHMWNDCEFYPESGIRTLILRSLIKLDRTNRLW MHDHLRDLGRAIVIEEDVENPYKRSRIWTKEDAIRMLKNKKGTDRVRMLRVDAESSDPVFLTNKCFEGLSNLRYLDIKHPKMSLNGFFSGILPSMCWIKL SSMSIPFNLNLKNVVILELRGWDVVDGWRGWKSVKSASKLKVINLHGCFNLTSVPDLSHCRSLESIDLTLCRRMMGKLNISAFRNLKVVMLQDTKIALTG DMRKLQKLEEIKTGKLAWGAEEVPELPTSLKRITISSPRIRNLLELKDLEELCFENCDEGPEIPGDIWQLSKLKTLKTIKCSCEGSLLSNQDGILPSSLT CLVVDWTGGLTRLPNLGNLINLMELRLSQFRASEIHGLGKLTVLEALEISESMSLDHLQGLEDLVHLKELTLKSCGLKGRLPNLSKLIKLHKLVIVNCPL LSEIQGLGELKRSLLHLEVSCCDSLADICGLESLEGLESLTLESATHKPFPDLSRLQNLKQLCIAGWRQLPEILGLERLKSLRSLEMKACKSLMRLPNLL GLENLETLDVSDCIQLADVTGLDRLKSLQKLNMSNCSAIEELPDISGMKSLNVLDVSECIKLVMVNGLVKLDSLEELYMVDCKSIQELPNMSHLRNLMKL NLKGCKKLKNVEGLEKLSLLWFVRMGKRLHLKYPLKTVAWASREVVVSLFGMAFMTERDEITTWYHKQIKGVRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69550			disease resistance protein (TI...		Lus10020238 [exp]	0	1
AT3G10530			Transducin/WD40 repeat-like su...		Lus10024656 [exp]	1.4	0.8618
AT5G19660		ATSBT6.1 ,ATS1P	SITE-1 protease (.1)		Lus10034919 [exp]	4.7	0.8175
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10001011 [exp]	5.7	0.8054
AT2G19560		ESSP1, AtTHP1, ...	ectopic expression of seed sto...		Lus10032680 [exp]	6.0	0.7790
AT2G37520			Acyl-CoA N-acyltransferase wit...		Lus10024419 [exp]	7.5	0.8013
AT5G66050			Wound-responsive family protei...		Lus10041852 [exp]	10.5	0.7719
AT1G22460			O-fucosyltransferase family pr...		Lus10033494 [exp]	12.0	0.7166
AT3G20720			unknown protein		Lus10011166 [exp]	14.8	0.7981
AT1G22460			O-fucosyltransferase family pr...		Lus10020943 [exp]	17.7	0.6933
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Lus10002946 [exp]	19.7	0.7919

Compare expression of checked genes

Lus10020238 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.