Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56690 997 / 0 CIP111 Cam interacting protein 111 (.1) AT5G03340 451 / 1e-143 ATPase, AAA-type, CDC48 protein (.1) AT3G53230 446 / 9e-142 ATPase, AAA-type, CDC48 protein (.1) AT3G09840 439 / 3e-139 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT3G01610 338 / 3e-101 CDC48C, EMB1354 embryo defective 1354, cell division cycle 48C (.1) AT2G03670 249 / 5e-71 CDC48B cell division cycle 48B (.1) AT1G03000 231 / 7e-63 PEX6 peroxin 6 (.1) AT5G08470 214 / 8e-57 EMB2817, PEX1 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) AT1G53750 201 / 5e-56 RPT1A regulatory particle triple-A 1A (.1) AT3G05530 195 / 3e-54 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002639 [exp] 1557 / 0 AT3G56690 1001 / 0.0 Cam interacting protein 111 (.1) Lus10037385 [exp] 451 / 1e-143 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021441 [exp] 446 / 1e-141 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016123 [exp] 439 / 5e-139 AT5G03340 1526 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021442 [exp] 439 / 6e-139 AT5G03340 1520 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016124 [exp] 437 / 2e-138 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10023018 [exp] 375 / 3e-115 AT5G03340 1419 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10001402 [exp] 360 / 3e-112 AT3G53230 803 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10039722 [exp] 336 / 2e-100 AT3G01610 754 / 0.0 embryo defective 1354, cell division cycle 48C (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G035000 [exp] 1097 / 0 AT3G56690 1080 / 0.0 Cam interacting protein 111 (.1) Potri.017G108200 [exp] 455 / 2e-145 AT5G03340 1311 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.016G091600 [exp] 447 / 3e-142 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.015G080600 [exp] 446 / 1e-141 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.006G125500 [exp] 446 / 1e-141 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.012G088200 [exp] 445 / 2e-141 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.001G128700 [exp] 345 / 7e-106 AT2G03670 766 / 0.0 cell division cycle 48B (.1) Potri.013G151600 [exp] 345 / 1e-103 AT3G01610 747 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Potri.001G174100 [exp] 225 / 2e-60 AT5G08470 1259 / 0.0 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) Potri.014G133000 [exp] 218 / 2e-58 AT1G03000 1165 / 0.0 peroxin 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10020255 pacid=23144191 polypeptide=Lus10020255 locus=Lus10020255.g ID=Lus10020255.BGIv1.0 annot-version=v1.0 ATGCCTTCAAAGACGAAGAAGCAGTCCAAGGGACAGTCGAGGCTGTCGAGCTCGGAGCTCTCCGGTTCGTCGCCTCGGACTCCGTCACTGACGCCTTCTC TAACTTCTCAATTCGGCGAAGATGAGGAAGAAGAATACCTATCCTCCTGTTTGGAAGAAGTGTCTAGGAGATTCCCTGATTTGATCGGAAAATCCGCTGT TGTTAGCCGAATCACTGACGTGGCTCCTGATTCTAGAGGCGGTAAAATCTGGCTCTCTGAGGCTTCCATGGTCGCTTCTTCAATCGTCCCTGGTTCCGTT GTCTCGGTGTCGATTGCTGCTTCAGCAAGTAATGGTTTTCCTCTCAGTGCAATATCGATGGATAGTGCTACACAGATGGGTATGGAGTTGATGGATGAAC AAGCTTATGCAGAAGGAAACTACTTTGCTCTTGCTACTGTTTTTCCTTCTTGTAAGGTTTTGAAGAACGGAGTGCGATTGTCAATAGATCTATGGTACAC AATGGGTTGTCCTGCTTCGAATAGCAATGTCTTTGTTTATCCTATAGAGAGTGACTTTGTAGGTAGTCGAATAAATGGAAGTACCAAACGAAACGACACG GCGAAAGTGTATATCAGAAATTGTAGCAAGCTATGCTTAGACTTGGTCCCTTTGAAGAAACGGTTGCAAATGGAAAGTGGTGAAAATTCTCACGATTCAT CTGCAAACAGTGTAGTTTCATCTCCAAGGACACCAATGTCTCGATCCAAACTCAGGTCTCCTAGTCCTGGTCAATTCTCTGCACCAAAACTTGAAGAAGT AGCAGCAGGTGGTTTGTCCTACCTAGCTGGTAAATTTGGTGATCCGTCTCGAATTAAGGACGTGCTAAAGGATGAAAATTCGAGAAAGCTACTGCAAGTT TGTGCTGCCTCATGGCTGTACGCGCGTGTTTTAATCTGTGGGAATGTCGTTGCAGTCCCTGTGATGTCAGAGCTTTTTGTTTACCGTGTGACGAGTGATC AAGAATTTACAGCTAGTGATGGTAACCAAGGGACGGAAGGCAAAAGGAGTAATGGTTACCCTAAAATGCCCGAGTTGGCAAATCATGAGACTGATGCCTT GGTCATAAATCATGAAACACAAGTGTATTTCTGTCACCAAGAAGGCTCAGCAGATGAAACCCCTAAGAAAAGGGGTGAGAAAACTGGTAGATATGATGTG CCGAAATTGGGTGGTCTACGCAAGGAATACAATATTTTGAAGGAAATAATTGCATCATCAATGAAGAACAATTTATCAAGTCTTGGTCTACGAACTACAA AGGGAGTGCTTCTTCATGGTCCACCTGGCACTGGGAAAACTTCCTTGGCTCGTCTATGCACCCGCGATGCTGCACTTAAAATTTTCACCGTTAACGGACC TGAGATAATAACTCAATATCATGGAGAAAGTGAGCAAGCACTGCGTGAAGTTTTTTATTCCGCTAGTCAAGCTGCACCAGCTGTGGTATTCATCGATGAA TTGGATGCCATTGTACCCGCAAGGAAAGAAGGAGGTGATGAGCTATCTCAGAGAATGGTGGCCACGCTATTGAACTTGATGGATGGTATTAGTAGGACTG ACGGAGTGGTCGTTATTGCGGCAACCAACCGGCCTGATAGTATTGAACCTGCACTGAGACGGCCAGGCAGACTTGATAGAGAAATTGAAATAGGTGTTCC GTCACCCCAGCAACGCCTAGAGATAATTCATACTCTTCTCGGTGAAATGGAACACTGCATTTCATATAGCCAAGCTAAGGATCTTGCCATGGCTACACAT GGCTTTGTGGGTGCTGATTTAGCTGCACTGTGTAACGAAGCCGCCTTGGTGTGTCTTAGGCGGTTTTCTAAGCTAGACAGATCTGGCGATAGTTCGCTTC TGAACTCGACGCTTAGTGCGGATTCTGGATCGGAGGTGGTGTCCACTTCCCGTGCTTCGCTACCGCCGATTCTGACATCTCCTAGCTTAAGTACTGCCTC CTCGTTAGTAGCTGATAACATCGATGACGGTACTAGTAACGGCCACGAGGATTCATTCTCAGTTGAAGACAAGCTATTGAAAGTCGTCTATGAAGACTTC GAAAAGGCCAGGATGAAAGTGAGGCCTAGCGCCATGCGAGAGGTAATACTCGAGGTACCAAAAGTCAAATGGGATGACATTGGTGGGCAACGAGAAGTAA AAACTCAACTGATGGAAGCAGTCGAATGGCCTCAAAAACATCAGGAGGCATTCAAACGCATTGGTACTCGTCCCCCGTCTGGAATTTTGATGTTCGGTCC TCCTGGTTGCAGTAAAACGCTCATGGCGCGAGCAGTAGCATCAGAAGCCGGATTGAATTTCCTGGCAGTTAAGGGTCCAGAGCTTTTCAGCAAATGGGTT GGTGAATCTGAAAAGGCTGTGAAGTCCCTTTTCGCTAAGGCCAGGGCCAATGCACCGTCGATCATCTTCTTCGACGAGATTGATAGTCTTGCAGTCATCC GCGGAAAGGAAAGTGATGGAGTTTCGGTTTCTGACCGGGTCATGAGCCAACTTCTTGTTGAATTAGATGGTCTGCATCAGCGAGTGAATGTTACCGTTAT CGCTGCCACAAATCAACCAGATAAGATTGATTCAGCCCTTCTAAGGCCAGGACGTTTCGATCGATTACTATACGTGGGACCTCCAAACGAGAATGATCGG GAAGCCATATTTTCGGTCCATCTACGTAGAATTCCATGCAGTTCAGATGTCAATACGAAAGAGCTTGCTTCTCTGACAGATGGATATACAGGAGCCGACA TCTCATTAATATGTCGCGAAGCAGCAATTTCGGCTCTCGAGGAAAACATCGATGCCTCAGAGGTGACAACGTGGCATTTGAAGAACGCAATCGAGCGAGT CCAGCCATCGAACTCTCAGTCTTACGAAAAGCTGTCAGCTCGGTTTCAAAGGCTCGTCCAATCCAGCAATGGCGGAGACTACGACGAATCAAGTGAGGAT CAAGATCAGCCGGGCAGATACCGAACCTGGTATATCATCAGTACCCTACTCGGAAAAAAAACCGCACAGTTTCGAAATTCAGCTGACATAAAACTCTTTC CTTCTCAGGGGCATGGTAAAATCTACTCTTGCAAGGCTTTTTTCTTAACTTATCAACTGGGTCGAACCGTTGAAATTTCGATCAAAGATTGTCGAATTTT CGCCGCTCGAGCTTTACTTTGCCTAATCAAAGGTCCGGGAACAGCAGTATTGATGTTGATGCCGTCACAAAGTTAA
AA sequence Show only first row Show all	>Lus10020255 pacid=23144191 polypeptide=Lus10020255 locus=Lus10020255.g ID=Lus10020255.BGIv1.0 annot-version=v1.0 MPSKTKKQSKGQSRLSSSELSGSSPRTPSLTPSLTSQFGEDEEEEYLSSCLEEVSRRFPDLIGKSAVVSRITDVAPDSRGGKIWLSEASMVASSIVPGSV VSVSIAASASNGFPLSAISMDSATQMGMELMDEQAYAEGNYFALATVFPSCKVLKNGVRLSIDLWYTMGCPASNSNVFVYPIESDFVGSRINGSTKRNDT AKVYIRNCSKLCLDLVPLKKRLQMESGENSHDSSANSVVSSPRTPMSRSKLRSPSPGQFSAPKLEEVAAGGLSYLAGKFGDPSRIKDVLKDENSRKLLQV CAASWLYARVLICGNVVAVPVMSELFVYRVTSDQEFTASDGNQGTEGKRSNGYPKMPELANHETDALVINHETQVYFCHQEGSADETPKKRGEKTGRYDV PKLGGLRKEYNILKEIIASSMKNNLSSLGLRTTKGVLLHGPPGTGKTSLARLCTRDAALKIFTVNGPEIITQYHGESEQALREVFYSASQAAPAVVFIDE LDAIVPARKEGGDELSQRMVATLLNLMDGISRTDGVVVIAATNRPDSIEPALRRPGRLDREIEIGVPSPQQRLEIIHTLLGEMEHCISYSQAKDLAMATH GFVGADLAALCNEAALVCLRRFSKLDRSGDSSLLNSTLSADSGSEVVSTSRASLPPILTSPSLSTASSLVADNIDDGTSNGHEDSFSVEDKLLKVVYEDF EKARMKVRPSAMREVILEVPKVKWDDIGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPSGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWV GESEKAVKSLFAKARANAPSIIFFDEIDSLAVIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNQPDKIDSALLRPGRFDRLLYVGPPNENDR EAIFSVHLRRIPCSSDVNTKELASLTDGYTGADISLICREAAISALEENIDASEVTTWHLKNAIERVQPSNSQSYEKLSARFQRLVQSSNGGDYDESSED QDQPGRYRTWYIISTLLGKKTAQFRNSADIKLFPSQGHGKIYSCKAFFLTYQLGRTVEISIKDCRIFAARALLCLIKGPGTAVLMLMPSQS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56690		CIP111	Cam interacting protein 111 (....		Lus10020255 [exp]	0	1
AT5G37055		ATSWC6, SEF	SERRATED LEAVES AND EARLY FLOW...		Lus10026399 [exp]	4.9	0.7309
AT1G73930			unknown protein		Lus10042970 [exp]	14.8	0.7691
AT2G38040		CAC3	acetyl Co-enzyme a carboxylase...		Lus10017184 [exp]	29.7	0.7421
AT1G35660			unknown protein		Lus10028705 [exp]	39.3	0.7266
AT1G74580			Pentatricopeptide repeat (PPR)...		Lus10038974 [exp]	45.8	0.7283
AT1G16280		SWA3, AtRH36	SLOW WALKER 3, Arabidopsis tha...		Lus10029596 [exp]	61.7	0.7231
					Lus10004928 [exp]	96.2	0.6550
AT3G51120			DNA binding;zinc ion binding;n...		Lus10014271 [exp]	132.2	0.6781
AT3G60410			Protein of unknown function (D...		Lus10010984 [exp]	134.2	0.6537
AT4G28010			Tetratricopeptide repeat (TPR)...		Lus10033639 [exp]	154.7	0.6619

Compare expression of checked genes

Lus10020255 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.