Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03980 359 / 5e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G13180 355 / 9e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G18210 325 / 1e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G04000 323 / 4e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G06060 115 / 6e-31 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G24360 116 / 1e-30 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G54870 109 / 6e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07440 107 / 1e-27 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29360 107 / 1e-27 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 104 / 2e-26 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002628 [exp] 476 / 1e-172 AT3G03980 358 / 1e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10036980 [exp] 130 / 1e-35 AT1G24360 437 / 3e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10015821 [exp] 127 / 3e-33 AT1G24360 427 / 5e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040271 [exp] 117 / 3e-31 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004704 [exp] 114 / 3e-30 AT5G06060 387 / 3e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040736 [exp] 109 / 2e-28 AT5G06060 382 / 3e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016499 [exp] 107 / 1e-27 AT5G06060 337 / 2e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029368 [exp] 105 / 5e-27 AT3G51680 231 / 3e-75 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040733 [exp] 105 / 1e-26 AT5G06060 346 / 5e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G059100 [exp] 395 / 1e-140 AT3G03980 360 / 1e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G033500 [exp] 379 / 4e-134 AT3G03980 321 / 3e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G059000 [exp] 357 / 4e-125 AT4G13180 359 / 4e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G033600 [exp] 298 / 8e-102 AT3G03980 279 / 4e-94 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G056100 [exp] 134 / 3e-37 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 133 / 7e-37 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G105700 [exp] 117 / 1e-31 AT2G47140 251 / 9e-84 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G104800 [exp] 117 / 1e-31 AT2G47140 243 / 2e-80 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039300 [exp] 114 / 2e-30 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026000 [exp] 114 / 3e-30 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10020265 pacid=23144036 polypeptide=Lus10020265 locus=Lus10020265.g ID=Lus10020265.BGIv1.0 annot-version=v1.0 ATGGCTACCACCGCATCCCAATCGTCTCCCTCACTCCCACTCGTCGACAAGGTGGCGATCGTCACTGGATCCTCTCGTGGCATCGGAAAAGCGATCGCTC TCCACCTGGGATCACTCGGTGCTCGAGTCGTCGTCAATTACTCTTCCAACAAGGAACAAGCAGACCTCGTTGCCGCCGAACTCAACAAATCCTCGTCCGA TTCCCTCCGCGCCATTTCTGTACTCGCTGACGTATCTGATCCAGCTCATATGAAGTCCTTGTTCGACGAGGCCGAGAGAGCGTTCGGGTCCGAGGTCCAT ATCCTGGTGAATTCCGCTGGGGTGTTGGATTCGAAGTATCCTTCTGTAGCCGATTCTTCCTTGGAGGATTTCGATCGTACTTTCGGTGTGAATACTAGAG GTGCGTTCCTATGCTGCAAGGAGGCAGCGAATCGGGTGAAACGTGGAGGTGGAGGCAGGATAATCTTGCTAACTTCGTCCTTGGTGGCTTCATTGAGACC AGGGTTTGGGGTCTATGTTGCTTCCAAGGCTGCTGTTGAGGCGATGGTGAAGGTTCTGGCAAAGGAGCTTAAGGGAACTGGGATCACTGCCAACTGTGTG GCGCCTGGTCCGATTGCGACTGAAATGTATTTTGCAGGGAAGTCCGAGGAGGTGATTCGTAGGAACATTGATGAATGCCCGTTAAGCCGACTTGGGGAAC CTGAGGACATTGCTAATGTTGTTGGGTTTTTGGCTAGTGATGCTGGTGAGTGGGTCAATGGACAGGTGATTCGTGCCAATGGTGGGTATGTTTAA
AA sequence Show only first row Show all	>Lus10020265 pacid=23144036 polypeptide=Lus10020265 locus=Lus10020265.g ID=Lus10020265.BGIv1.0 annot-version=v1.0 MATTASQSSPSLPLVDKVAIVTGSSRGIGKAIALHLGSLGARVVVNYSSNKEQADLVAAELNKSSSDSLRAISVLADVSDPAHMKSLFDEAERAFGSEVH ILVNSAGVLDSKYPSVADSSLEDFDRTFGVNTRGAFLCCKEAANRVKRGGGGRIILLTSSLVASLRPGFGVYVASKAAVEAMVKVLAKELKGTGITANCV APGPIATEMYFAGKSEEVIRRNIDECPLSRLGEPEDIANVVGFLASDAGEWVNGQVIRANGGYV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03980			NAD(P)-binding Rossmann-fold s...		Lus10020265 [exp]	0	1
AT2G27260			Late embryogenesis abundant (L...		Lus10013329 [exp]	1.0	0.9453
AT5G35732			unknown protein		Lus10006404 [exp]	1.4	0.9275
AT3G06780			glycine-rich protein (.1)		Lus10016828 [exp]	1.7	0.9133
AT4G21860		MSRB2	methionine sulfoxide reductase...		Lus10020486 [exp]	3.7	0.8857
AT2G32120		HSP70T-2	heat-shock protein 70T-2 (.1.2...		Lus10021920 [exp]	4.5	0.8961
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10037412 [exp]	4.9	0.8853
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10026198 [exp]	5.5	0.8865
AT1G07710			Ankyrin repeat family protein ...		Lus10024440 [exp]	6.0	0.8844
AT3G56880			VQ motif-containing protein (....		Lus10012292 [exp]	6.5	0.8719
AT4G03965			RING/U-box superfamily protein...		Lus10029993 [exp]	7.4	0.8775

Compare expression of checked genes

Lus10020265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.