Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27200 52 / 1e-08 Cupredoxin superfamily protein (.1) AT2G31050 51 / 7e-08 Cupredoxin superfamily protein (.1) AT2G32300 50 / 2e-07 UCC1 uclacyanin 1 (.1) AT3G60270 49 / 3e-07 Cupredoxin superfamily protein (.1) AT5G26330 48 / 5e-07 Cupredoxin superfamily protein (.1) AT2G02850 44 / 5e-06 ARPN plantacyanin (.1) AT2G26720 45 / 8e-06 Cupredoxin superfamily protein (.1) AT3G17675 42 / 4e-05 Cupredoxin superfamily protein (.1) AT3G60280 41 / 0.0002 UCC3 uclacyanin 3 (.1) AT4G28365 40 / 0.0004 AtENODL3 early nodulin-like protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002618 [exp] 186 / 6e-61 AT3G27200 89 / 2e-23 Cupredoxin superfamily protein (.1) Lus10002617 [exp] 75 / 5e-16 AT3G53330 105 / 1e-26 plastocyanin-like domain-containing protein (.1) Lus10020276 [exp] 72 / 1e-14 AT1G45063 116 / 9e-30 copper ion binding;electron carriers (.1.2) Lus10007026 [exp] 65 / 3e-13 AT2G32300 96 / 4e-25 uclacyanin 1 (.1) Lus10007028 [exp] 65 / 4e-13 AT5G26330 92 / 8e-24 Cupredoxin superfamily protein (.1) Lus10002616 [exp] 61 / 2e-12 AT3G17675 50 / 6e-09 Cupredoxin superfamily protein (.1) Lus10020280 [exp] 59 / 7e-11 AT3G17675 79 / 2e-19 Cupredoxin superfamily protein (.1) Lus10002608 [exp] 57 / 2e-10 AT3G17675 82 / 2e-20 Cupredoxin superfamily protein (.1) Lus10002615 [exp] 56 / 6e-10 AT5G26330 96 / 9e-26 Cupredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G117900 [exp] 61 / 8e-12 AT3G17675 108 / 6e-31 Cupredoxin superfamily protein (.1) Potri.013G061300 [exp] 60 / 2e-11 AT3G17675 102 / 1e-28 Cupredoxin superfamily protein (.1) Potri.013G054500 [exp] 50 / 9e-08 AT3G17675 91 / 3e-24 Cupredoxin superfamily protein (.1) Potri.002G052500 [exp] 49 / 1e-07 AT5G26330 130 / 9e-39 Cupredoxin superfamily protein (.1) Potri.013G030000 [exp] 49 / 2e-07 AT3G17675 106 / 2e-30 Cupredoxin superfamily protein (.1) Potri.013G030450 [exp] 49 / 2e-07 AT3G17675 106 / 2e-30 Cupredoxin superfamily protein (.1) Potri.001G332200 [exp] 48 / 4e-07 AT3G27200 171 / 5e-55 Cupredoxin superfamily protein (.1) Potri.002G074000 [exp] 46 / 1e-06 AT2G02850 154 / 1e-49 plantacyanin (.1) Potri.008G151000 [exp] 47 / 2e-06 AT5G26330 183 / 2e-59 Cupredoxin superfamily protein (.1) Potri.002G161300 [exp] 45 / 4e-06 AT5G26330 146 / 5e-45 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10020275 pacid=23144138 polypeptide=Lus10020275 locus=Lus10020275.g ID=Lus10020275.BGIv1.0 annot-version=v1.0 ATGGCTTCCCAATCCTTATCCAGCAAGGATTTCTTGCTTCTTACTATGGCTATGACAATTCTAGTCACTACTACTCCACCCACAGCTTTGGCTGAGACCT TCATCGTTGGTGGTAATCAGGGATGGAGAAATGGGGTCGACTACGAGGCATGGGCTCGTGACAAGGTGTTTCGTGTCGGCGACAAACTGGTTAGTCGTGC TATTATTGTGAATTCAGTCACTTTACTCAATGCTACATGGAATGTTCATTACACATTGGTCATTCAACTTCATAACATACTCACAATGGTCCTCATCTAT GTACACATTAGTCACTCAACTATACATTTTCTGACAAAACGGTCACTTCTCCATCGTCTTAAACACGCAGTTTTCAAGTACCAGAAGTGCTTCCACAGCG TGGTGAGGGTAATACTCGAGGAGCAGTTCCAGAAGTGCACCGTCCCCGCGGGAGCCAACCAGCTAACGTCCGGATCCGACATCGTTCCCCTCACGACCGA GGGAAGGAAGTTCTTCGTGTGCGGCGTGGGAAGCAACTGCCTTGATAGCTGCCAGAAGCTTGCTATATTTGTGAGGCCACACCATGGTTAA
AA sequence Show only first row Show all	>Lus10020275 pacid=23144138 polypeptide=Lus10020275 locus=Lus10020275.g ID=Lus10020275.BGIv1.0 annot-version=v1.0 MASQSLSSKDFLLLTMAMTILVTTTPPTALAETFIVGGNQGWRNGVDYEAWARDKVFRVGDKLVSRAIIVNSVTLLNATWNVHYTLVIQLHNILTMVLIY VHISHSTIHFLTKRSLLHRLKHAVFKYQKCFHSVVRVILEEQFQKCTVPAGANQLTSGSDIVPLTTEGRKFFVCGVGSNCLDSCQKLAIFVRPHHG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27200			Cupredoxin superfamily protein...		Lus10020275 [exp]	0	1

Compare expression of checked genes

Lus10020275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.