Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45063 109 / 3e-27 copper ion binding;electron carriers (.1.2) AT2G32300 95 / 4e-22 UCC1 uclacyanin 1 (.1) AT3G17675 86 / 1e-20 Cupredoxin superfamily protein (.1) AT2G31050 84 / 1e-18 Cupredoxin superfamily protein (.1) AT2G26720 80 / 5e-17 Cupredoxin superfamily protein (.1) AT3G27200 78 / 8e-17 Cupredoxin superfamily protein (.1) AT5G26330 77 / 2e-16 Cupredoxin superfamily protein (.1) AT2G02850 75 / 3e-16 ARPN plantacyanin (.1) AT5G07475 74 / 2e-15 Cupredoxin superfamily protein (.1) AT5G20230 72 / 1e-14 SAG14, ATBCB SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002617 [exp] 467 / 5e-166 AT3G53330 105 / 1e-26 plastocyanin-like domain-containing protein (.1) Lus10002616 [exp] 140 / 4e-41 AT3G17675 50 / 6e-09 Cupredoxin superfamily protein (.1) Lus10007027 [exp] 117 / 3e-31 AT5G26330 100 / 5e-27 Cupredoxin superfamily protein (.1) Lus10002614 [exp] 112 / 7e-30 AT2G32300 100 / 1e-26 uclacyanin 1 (.1) Lus10002618 [exp] 110 / 3e-29 AT3G27200 89 / 2e-23 Cupredoxin superfamily protein (.1) Lus10006657 [exp] 115 / 7e-29 AT1G45063 106 / 1e-26 copper ion binding;electron carriers (.1.2) Lus10006682 [exp] 110 / 1e-28 AT2G32300 95 / 1e-24 uclacyanin 1 (.1) Lus10038098 [exp] 111 / 2e-27 AT1G45063 107 / 1e-27 copper ion binding;electron carriers (.1.2) Lus10007028 [exp] 107 / 3e-27 AT5G26330 92 / 8e-24 Cupredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G061300 [exp] 135 / 5e-38 AT3G17675 102 / 1e-28 Cupredoxin superfamily protein (.1) Potri.013G030450 [exp] 131 / 2e-36 AT3G17675 106 / 2e-30 Cupredoxin superfamily protein (.1) Potri.013G030000 [exp] 131 / 2e-36 AT3G17675 106 / 2e-30 Cupredoxin superfamily protein (.1) Potri.003G117900 [exp] 129 / 1e-35 AT3G17675 108 / 6e-31 Cupredoxin superfamily protein (.1) Potri.019G037800 [exp] 123 / 2e-33 AT3G17675 98 / 4e-27 Cupredoxin superfamily protein (.1) Potri.013G054500 [exp] 121 / 5e-33 AT3G17675 91 / 3e-24 Cupredoxin superfamily protein (.1) Potri.002G161300 [exp] 92 / 5e-22 AT5G26330 146 / 5e-45 Cupredoxin superfamily protein (.1) Potri.002G101300 [exp] 91 / 4e-21 AT1G72230 131 / 6e-39 Cupredoxin superfamily protein (.1) Potri.002G101200 [exp] 89 / 7e-20 AT1G72230 129 / 2e-37 Cupredoxin superfamily protein (.1) Potri.006G259101 [exp] 86 / 2e-19 AT5G26330 142 / 2e-43 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10020276 pacid=23144114 polypeptide=Lus10020276 locus=Lus10020276.g ID=Lus10020276.BGIv1.0 annot-version=v1.0 ATGACTAACTTTTTGGGTTTGTTGGTTGTTCTTGTCGCGATCGTGACTTTCATTCCATCGACAGTTCTTGCCAGGGATTTCATCGTCGGGGATAGTTATG GTTGGACGATAAACTTCGACTATCAATCTTGGACAAAAAACAAGGACTTCCGTGTCGGTGATAGACTCGTTTTCAAGTACCGAATGGGAGACCACAACGT GTACAAGGCCAACGGGACGGAATTCCAGAATTGTGAGGTTCCGTCGGCTGCTAGCCGTGGATTAGCTATGACTTCTGGAAACGACATCGTTACGTTGACG ACTTTAGGGAGAAAATGGTACATTTGTGGAAAGCCGAATCACTGCTCGAGTTATAATCAGAAGCTTGTGATCGTCGTGAAGCCCAATGCCGGTGCATGGG CTCCAAGCCCATCAGTACCTTCTGTACCTTCCGGCAAGGATTTTGTCGTGGGTGATAAATATGGTTGGACAATAAACTTTGACTACCAATTGTGGGCCAA AGACAAGGACTTTCGTGTCGGTGATAGACTCATTTTCAAGTACCGAATGGGAAACCACAACGTGTACAAGGCCAACGGGACGGAGTTCCAAAACTGTGAG GTTCCATCCGCTGCGAGCCGTGGCTTGGCGATGACTTCTGGAAACGACATCGTTACCCTGACGACTCCAGGGAGAAAATGGTACATTTGTGGAAAGCCGA GTCATTGCTCGCACTATAATCAGAAGCTTGTGATCATCGTGAAGCCCAATGCCGGTGCATGGGCTCCAAGCCCATTACCTTATTTAACTCCTGAAAATGG TTGGGCCCCAAGTATTTCACCTCCTTTAACTTCCGGTAAGGATTTCATCGTGGGCGATAGTTATGGTTGGACCATAAACTTCGACTACCAATCTTGGGCA AAAAATAAGGACTTTCGAGTCGGTGATAGGCTCGTTTTCAAGTACCCAATGGGAGACCACAACGTTTACAAGGCCAACGAGACGGAGTTCCAAAACTGCG AGGTCCCATCGGCTGCGAGCCGTGGCTTGGCTATGACTTCTGGAAATGACATCGTTACCCTGACGACTCCAGGGAAAAAATGGTACATTTGTGGAAAGCC GAATCATTGCTCAAGCTATAATCAGAAGCTTGTGATCTTTGTAAAGCCCAAGACCAATTCCTGGGCTCCGAGCCCGTCTCACTCCTCCGCCGCCACCGTG GAGAAGAAGACGGTGCCGGTTTCCAACTTCAATTGA
AA sequence Show only first row Show all	>Lus10020276 pacid=23144114 polypeptide=Lus10020276 locus=Lus10020276.g ID=Lus10020276.BGIv1.0 annot-version=v1.0 MTNFLGLLVVLVAIVTFIPSTVLARDFIVGDSYGWTINFDYQSWTKNKDFRVGDRLVFKYRMGDHNVYKANGTEFQNCEVPSAASRGLAMTSGNDIVTLT TLGRKWYICGKPNHCSSYNQKLVIVVKPNAGAWAPSPSVPSVPSGKDFVVGDKYGWTINFDYQLWAKDKDFRVGDRLIFKYRMGNHNVYKANGTEFQNCE VPSAASRGLAMTSGNDIVTLTTPGRKWYICGKPSHCSHYNQKLVIIVKPNAGAWAPSPLPYLTPENGWAPSISPPLTSGKDFIVGDSYGWTINFDYQSWA KNKDFRVGDRLVFKYPMGDHNVYKANETEFQNCEVPSAASRGLAMTSGNDIVTLTTPGKKWYICGKPNHCSSYNQKLVIFVKPKTNSWAPSPSHSSAATV EKKTVPVSNFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G45063			copper ion binding;electron ca...		Lus10020276 [exp]	0	1
					Lus10020958 [exp]	6.2	0.6922
					Lus10021906 [exp]	8.8	0.6922
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Lus10027205 [exp]	9.5	0.6808
					Lus10003695 [exp]	10.8	0.6922
AT3G55700			UDP-Glycosyltransferase superf...		Lus10040724 [exp]	12.5	0.6922
AT1G73890			Bifunctional inhibitor/lipid-t...		Lus10032488 [exp]	13.9	0.6500
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Lus10008978 [exp]	14.0	0.6922
AT4G35700	C2H2ZnF	DAZ3	DUO1-activated zinc finger 3, ...		Lus10041633 [exp]	15.3	0.6922
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Lus10014436 [exp]	16.5	0.6922
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Lus10015428 [exp]	17.7	0.6922

Compare expression of checked genes

Lus10020276 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.