Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03560 479 / 3e-160 unknown protein AT3G48230 232 / 2e-68 Protein of Unknown Function (DUF239) (.1) AT2G17750 228 / 1e-66 NIP1 NEP-interacting protein 1 (.1) AT5G18460 224 / 8e-65 Protein of Unknown Function (DUF239) (.1) AT2G44210 223 / 2e-64 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT2G44220 222 / 2e-64 Protein of Unknown Function (DUF239) (.1) AT2G44240 219 / 2e-63 Protein of Unknown Function (DUF239) (.1) AT1G70550 213 / 5e-61 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT1G23340 210 / 5e-60 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT5G56530 210 / 6e-60 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005694 [exp] 996 / 0 AT3G03560 501 / 3e-174 unknown protein Lus10006862 [exp] 262 / 3e-79 AT2G44220 265 / 1e-85 Protein of Unknown Function (DUF239) (.1) Lus10033910 [exp] 258 / 1e-77 AT2G44220 292 / 1e-95 Protein of Unknown Function (DUF239) (.1) Lus10006863 [exp] 255 / 1e-76 AT2G44220 246 / 5e-78 Protein of Unknown Function (DUF239) (.1) Lus10006858 [exp] 246 / 2e-73 AT2G44220 256 / 3e-82 Protein of Unknown Function (DUF239) (.1) Lus10006861 [exp] 244 / 1e-72 AT5G18460 272 / 8e-88 Protein of Unknown Function (DUF239) (.1) Lus10036998 [exp] 245 / 1e-71 AT2G44220 247 / 9e-77 Protein of Unknown Function (DUF239) (.1) Lus10037600 [exp] 231 / 9e-68 AT1G10750 253 / 5e-80 Protein of Unknown Function (DUF239) (.1) Lus10004766 [exp] 230 / 1e-66 AT5G18460 603 / 0.0 Protein of Unknown Function (DUF239) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G073400 [exp] 570 / 0 AT3G03560 568 / 0.0 unknown protein Potri.001G233000 [exp] 225 / 4e-65 AT3G13510 621 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.019G024100 [exp] 221 / 8e-64 AT5G18460 622 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.013G050100 [exp] 217 / 3e-62 AT5G18460 635 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.015G080300 [exp] 214 / 9e-61 AT5G50150 637 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.010G044300 [exp] 209 / 4e-59 AT1G70550 664 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.003G221200 [exp] 208 / 4e-59 AT1G55360 716 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G003800 [exp] 207 / 6e-59 AT1G55360 689 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.012G088300 [exp] 206 / 3e-58 AT5G50150 592 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.008G188000 [exp] 204 / 2e-57 AT1G70550 661 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03080 [flax] [poplar] Neprosin Neprosin
Representative CDS sequence Show only first row Show all	>Lus10020297 pacid=23144159 polypeptide=Lus10020297 locus=Lus10020297.g ID=Lus10020297.BGIv1.0 annot-version=v1.0 ATGGGAGAATTTAGCTTCTATGCAGTCGGCTGTTCATTCCGATGCCGCCGGCTGTTCATTTCAGGAAGAATTGAAACAGGATTTATGAAGTCTTCTAGTA GCAGAATGTCGCAGCTGGGACTTACGGATGAGAGGGTTCAGCCGCAGAGTTCCAACTCTATGCAGAATCAGAGGAGTGATTTTGGAACACAGCCTACTCA TAGGGACGCAACTGGTGACGAAAGACTAAGTTTTGCTGAGGATGAAGAGGCAATGGCTCTTTACTCGAGAGTGATGAACCAAAAAGAGGAGATTCAGATG CTACGTAAACAGATTGCTACTGCTGGCGTCAAGGAACTCCAATTACTGAGTGAGAAATATGCACTGGAGAGGAAATTCTCTGAGTTGAGAAGGGCAATTG ACGATAAGCAAAACGAAGCTGTTACAGCTGCTTTAAATGAATTAGTTCGTAGAAAAGGTGACCTTGAAGAGAATTTCAAGTTGGCTCACAACTTGAAGGT GGTAGATGATGAAAGGTATATTTTTGTGTCTTCTATTCTTGGCTTGTTGGCTGAACATGAAATTTGGCCCCATGCTCTGAATGCCTCTTCATTATCCAAT AGTGTGAAGGAGAGAATAAGAGAGTTGGGATCTACTATGGGATCACAAACTGAGAGTGGCAATCATGACGGAGACAATCTTGGGCCTGGCATTCTGACTG GTCAATTTCATGATCCAGCCGTGGGCCGTCATACGAATCATCATAATACACTTGAGCCAAGAGATAATATGCTGGGACATATGCCTCAGACGAATATTGC AGAAAGAGCAAGTTCTATGCTTGACAATGACCGGCAACCACAGCTTCGTAGCAACAATTCTCCGGAGTTTGAATTTAATCGTGATAGCCATGGAAGTAGT TTCGGTGCAGCAAGTAGTTCACTCTCTCTCAGTTTCAATAAAGGTCTCGGCGAAATGAGAGGACAAGAGATGGTGACTAAAGACTTGCTTCTACCTTCAA ATGGAGATCATGAAATGACTTCCTCTGTTTCTGATGATGGCCCTGGCATAGATGGGTTTCAGATTGTTGGAGATGCTGCCCCTGGAGAAAGGCTCCTTGG TTGTGGATACCCGGTTCGAGGAACCTCTCTTTGCATGTTTCAGTGGGTCCGCCATCTTGATGATGGCACCAGGCAGTACATTGATGGTGCCACAAATCCA GAATATATTGTTACTGCTGATGATGTTGATAAGGTCATTGCCGTTGAGTGCATACCAATGGATGATCAAGGCCGTCAAGGAGAACTAGTGAGACTATTTG CAAATGGCCAACGGAAAATTAAATACCCAGATATGCAATCAGAAATCGACTCGTATATCGCCCATGGGGAAGCTACATTTAGCGTCTTATTGCTGATGGA CACTTCTGAGAATTGGGAGCCAATCGATCTAGTCTTGCAACGATCTGGCTATCGTATGAAGAGCAAAATCTCAGTCGAATTAGTTCTCGCTGAAAAATTC TCCAAGGATCTTTCAATAAAAATCCCTTCTGGTTCGACACAATTTGTTCTCACGAGCTCCGATGGAACATCTTATCCTCTCAGTACATCAACTGTTCGGA TGCGAGAAACTCTTGTGCTGACAATGAGAATGTTTCAGAGTAAGAGTAAAGGTGGTGATATTATCGACTGTGTAGATATACACAAGCAGCCAGCTTTGAA CCATCCGCTCATGGCCAACCACATTCTACAATGGATGGTCATCAGATCGGTTTTGTTGCAGATGAAACCGAGTTGGTATCCTGATTCGGTTCAAGGAAAA GACTCATCGAAGCAAATAATTAACTGGCAGGAGAATAGAGTACATTGTCCTCAAGGGACGATCCCAATTTCAAGAAATAAGCTCGGAAAGAAATTTAGTT CTGAATATAATCTGGCAAGCACACCCTACAACAGTGAGAAGGCTCAAGTATCAATTGATGGGGATATTTACTACGGAGCTAGGGCCGTATTGAGTGCGAA TAACCCAAAGGTAATGATGGATGAGTACAGCCATTCTCAGATTTGGGTGGAGGCCGGCGAATTCACTCATAGGAATGTTGTTGAAGCAGGTTGGATGGTG AGTCACTCTCGCAACTTTACAGATACACGTTACTTCATACATTGGACCCGTGATAACTACAACATAACAGGATGTTACAATTTGGAATGCCAAGGTTTTG TACAAACAAATTACAATATATCTTTTGGCGAGCCTCTACCGGACCTCAAATATTCCACTTACGGCGGGAAACAATACGGGATTAGTTTTGAAATCCACAA GGACATGAAGAGTGGAAATTGGTGGCTGAGGATACAAGATAAAGCCATAGGATACTGGCCGGTTGAAATCTTCAACAATGGGGGGTTGGTAAGTGAGGGT GCGAGATATATCAGTTGGGGAGGTGAAGTTTCAAGGTTAAAGCAGGAAGGAGTCCACACAAGTACAGAAATGGGAAGCGGGCATTTAGCGAGTGAAGGAT GGGGCAAAGCAGCCTTCATTAGACACATGGGATATTTCGATGAAGCCGGTCGTTTCAACGATGCTGACGACGTCTTTCCTGTGGTCACCAGTCCTGAATG TTACAGCGTTTCCATCCAACAAAAGAGCAAGGTTGCTGGTGTTTGTTCCTACTATGGCGGTCCCGGTTACAACGATATGTGCACTTCAAAGTAA
AA sequence Show only first row Show all	>Lus10020297 pacid=23144159 polypeptide=Lus10020297 locus=Lus10020297.g ID=Lus10020297.BGIv1.0 annot-version=v1.0 MGEFSFYAVGCSFRCRRLFISGRIETGFMKSSSSRMSQLGLTDERVQPQSSNSMQNQRSDFGTQPTHRDATGDERLSFAEDEEAMALYSRVMNQKEEIQM LRKQIATAGVKELQLLSEKYALERKFSELRRAIDDKQNEAVTAALNELVRRKGDLEENFKLAHNLKVVDDERYIFVSSILGLLAEHEIWPHALNASSLSN SVKERIRELGSTMGSQTESGNHDGDNLGPGILTGQFHDPAVGRHTNHHNTLEPRDNMLGHMPQTNIAERASSMLDNDRQPQLRSNNSPEFEFNRDSHGSS FGAASSSLSLSFNKGLGEMRGQEMVTKDLLLPSNGDHEMTSSVSDDGPGIDGFQIVGDAAPGERLLGCGYPVRGTSLCMFQWVRHLDDGTRQYIDGATNP EYIVTADDVDKVIAVECIPMDDQGRQGELVRLFANGQRKIKYPDMQSEIDSYIAHGEATFSVLLLMDTSENWEPIDLVLQRSGYRMKSKISVELVLAEKF SKDLSIKIPSGSTQFVLTSSDGTSYPLSTSTVRMRETLVLTMRMFQSKSKGGDIIDCVDIHKQPALNHPLMANHILQWMVIRSVLLQMKPSWYPDSVQGK DSSKQIINWQENRVHCPQGTIPISRNKLGKKFSSEYNLASTPYNSEKAQVSIDGDIYYGARAVLSANNPKVMMDEYSHSQIWVEAGEFTHRNVVEAGWMV SHSRNFTDTRYFIHWTRDNYNITGCYNLECQGFVQTNYNISFGEPLPDLKYSTYGGKQYGISFEIHKDMKSGNWWLRIQDKAIGYWPVEIFNNGGLVSEG ARYISWGGEVSRLKQEGVHTSTEMGSGHLASEGWGKAAFIRHMGYFDEAGRFNDADDVFPVVTSPECYSVSIQQKSKVAGVCSYYGGPGYNDMCTSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03560			unknown protein		Lus10020297 [exp]	0	1
AT3G03560			unknown protein		Lus10005694 [exp]	1.4	0.8958
AT3G12100			Cation efflux family protein (...		Lus10004168 [exp]	2.0	0.9120
AT2G23890			HAD-superfamily hydrolase, sub...		Lus10019962 [exp]	6.6	0.8815
AT5G06440			unknown protein		Lus10029361 [exp]	9.3	0.8500
AT3G06760			Drought-responsive family prot...		Lus10010305 [exp]	9.5	0.8798
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Lus10042890 [exp]	9.6	0.8880
AT1G07650			Leucine-rich repeat transmembr...		Lus10031374 [exp]	10.1	0.8657
AT3G24090			glutamine-fructose-6-phosphate...		Lus10026998 [exp]	13.8	0.8521
AT1G15030			Protein of unknown function (D...		Lus10031598 [exp]	14.8	0.8761
AT5G46550			DNA-binding bromodomain-contai...		Lus10011989 [exp]	22.0	0.8753

Compare expression of checked genes

Lus10020297 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.