Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69560 128 / 1e-34 MYB LOF2, ATMYB105 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) AT1G26780 125 / 3e-34 MYB LOF1, ATMYB117 LATERAL ORGAN FUSION 1, myb domain protein 117 (.1.2) AT3G29020 121 / 4e-33 MYB ATMYB110 myb domain protein 110 (.1.2) AT5G17800 123 / 5e-33 MYB ATMYB56 myb domain protein 56 (.1) AT1G17950 120 / 2e-32 MYB AtMYB52, BW52, MYB52 myb domain protein 52 (.1) AT4G33450 116 / 4e-31 MYB ATMYB69 myb domain protein 69 (.1) AT1G73410 112 / 2e-29 MYB AtMYB54, BW54, MYB54 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 54, myb domain protein 54 (.1) AT5G39700 96 / 1e-23 MYB ATMYB89 myb domain protein 89 (.1) AT3G09230 97 / 8e-23 MYB ATMYB1 myb domain protein 1 (.1) AT2G39880 96 / 2e-22 MYB ATMYB25 myb domain protein 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005683 [exp] 287 / 2e-96 AT5G17800 212 / 1e-66 myb domain protein 56 (.1) Lus10030452 [exp] 129 / 1e-34 AT1G69560 240 / 6e-77 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10026611 [exp] 129 / 2e-34 AT1G69560 238 / 5e-76 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10018936 [exp] 123 / 2e-33 AT1G69560 206 / 6e-65 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10031900 [exp] 125 / 3e-33 AT1G17950 220 / 2e-70 myb domain protein 52 (.1) Lus10031326 [exp] 124 / 4e-33 AT1G17950 219 / 3e-70 myb domain protein 52 (.1) Lus10028638 [exp] 122 / 1e-32 AT1G17950 206 / 7e-66 myb domain protein 52 (.1) Lus10029746 [exp] 122 / 2e-32 AT1G17950 199 / 1e-62 myb domain protein 52 (.1) Lus10040239 [exp] 98 / 3e-23 AT3G55730 315 / 1e-104 myb domain protein 109 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G088000 [exp] 130 / 6e-35 AT1G69560 229 / 2e-71 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Potri.017G085200 [exp] 130 / 1e-34 AT1G69560 215 / 2e-66 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Potri.010G167500 [exp] 128 / 7e-34 AT1G69560 237 / 8e-75 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Potri.007G134500 [exp] 124 / 7e-34 AT1G17950 246 / 5e-82 myb domain protein 52 (.1) Potri.015G033600 [exp] 123 / 1e-33 AT1G17950 254 / 1e-85 myb domain protein 52 (.1) Potri.012G039400 [exp] 122 / 2e-33 AT1G17950 267 / 1e-90 myb domain protein 52 (.1) Potri.005G186400 [exp] 122 / 2e-32 AT1G17950 197 / 1e-61 myb domain protein 52 (.1) Potri.002G073500 [exp] 119 / 2e-31 AT1G17950 202 / 9e-64 myb domain protein 52 (.1) Potri.017G017600 [exp] 117 / 2e-31 AT1G17950 243 / 3e-81 myb domain protein 52 (.1) Potri.019G040900 [exp] 119 / 6e-31 AT1G26780 211 / 4e-66 LATERAL ORGAN FUSION 1, myb domain protein 117 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10020309 pacid=23144176 polypeptide=Lus10020309 locus=Lus10020309.g ID=Lus10020309.BGIv1.0 annot-version=v1.0 ATGAGTAAAGTTGAGAGATTCGCTTCCGGAACGAAGAGGCCCTTCTGGGGTCTCTCTCTGGACATGAATGGACAGTCTGCGGCGAAGGTGGCGGCTGTAG AGGAGGAGGTGGACAACAGTCGTTCTGTTGTCGGCCTTGGCGGGAAACGACAGAGCAAGAAGAAGGTATGCGCGTTTAATTATGGGAAGAGTTGCAGGCT GAGGTGGTTCAACCAGCTCGACCCGAAGATAACCCGAACCATATTCAGCGAGGAGGAAGAAGACCGTCTAATAACGGCTCACAGGATGTACGGCAACAAA TGGGCGATGATTGCAAAGGTGTTTCCAGGGAGGACAGATAACGCCGTTAAGAATCACTGGCACGTCATGACAGCAAGACGTCAAAGGGAGCAGTCCAACC CCTACCGTAGAAGGAGACCCTTCTCTAGTTATTATTCTCCTTCCTCCTCTGGCTCCCCTGCTTTTCCGCCGAAAATGGGCAGCGAATCGACGGCAACCGC GAGCACGTGTACGACCGACCTCTCGCTCTCGCCTTCCTCGGCGAGACAAGCTGGTTGCTTGCCTTTCTCCAGGTTCAACCCGCCGAGGAAATACCAGTTG GGTGCCCATGGCTTTGTTGTAGCTGCAGAAGACGACGAGACGAGAACAAAAGAAAGAGACAATGGCAGCAACAACTCCAACAGTTACAACAACAGCGGGG TTTACGACCGTGTTACACCGGGTTCCAACTCATCATCTTCTGAGAATGGTTCGGTTGAAACTCGAATCGAAAGCAGGACCGAGCTGACAATTCTTAACGA CGAGAATGTGGGGATCGCGACCATCGAGTTCATCGACTTCCTTGGTGTCGGATCCGCCTGA
AA sequence Show only first row Show all	>Lus10020309 pacid=23144176 polypeptide=Lus10020309 locus=Lus10020309.g ID=Lus10020309.BGIv1.0 annot-version=v1.0 MSKVERFASGTKRPFWGLSLDMNGQSAAKVAAVEEEVDNSRSVVGLGGKRQSKKKVCAFNYGKSCRLRWFNQLDPKITRTIFSEEEEDRLITAHRMYGNK WAMIAKVFPGRTDNAVKNHWHVMTARRQREQSNPYRRRRPFSSYYSPSSSGSPAFPPKMGSESTATASTCTTDLSLSPSSARQAGCLPFSRFNPPRKYQL GAHGFVVAAEDDETRTKERDNGSNNSNSYNNSGVYDRVTPGSNSSSSENGSVETRIESRTELTILNDENVGIATIEFIDFLGVGSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69560	MYB	LOF2, ATMYB105	LATERAL ORGAN FUSION 2, myb do...		Lus10020309 [exp]	0	1
AT3G51750			unknown protein		Lus10002202 [exp]	6.8	0.7086
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10020556 [exp]	12.5	0.8126
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10002305 [exp]	16.5	0.7920
					Lus10031019 [exp]	18.0	0.7483
AT1G25480			Aluminium activated malate tra...		Lus10035037 [exp]	23.2	0.7546
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Lus10042962 [exp]	23.9	0.7748
AT5G22580			Stress responsive A/B Barrel D...		Lus10009407 [exp]	26.7	0.7743
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Lus10022032 [exp]	27.2	0.7174
AT1G63820			CCT motif family protein (.1)		Lus10024655 [exp]	30.6	0.6974
AT1G55840			Sec14p-like phosphatidylinosit...		Lus10022533 [exp]	32.5	0.7679

Compare expression of checked genes

Lus10020309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.