Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58030 946 / 0 CAT2 cationic amino acid transporter 2 (.1) AT5G36940 884 / 0 CAT3 cationic amino acid transporter 3 (.1) AT3G03720 769 / 0 CAT4 cationic amino acid transporter 4 (.1.2) AT1G05940 260 / 1e-78 CAT9 cationic amino acid transporter 9 (.1) AT4G21120 246 / 6e-73 CAT1, AAT1 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) AT5G04770 244 / 3e-72 CAT6, ATCAT6 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) AT3G10600 236 / 2e-69 CAT7 cationic amino acid transporter 7 (.1) AT2G34960 227 / 3e-66 CAT5 cationic amino acid transporter 5 (.1) AT1G17120 194 / 8e-54 CAT8 cationic amino acid transporter 8 (.1) AT3G13620 52 / 6e-07 Amino acid permease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005671 [exp] 1261 / 0 AT1G58030 958 / 0.0 cationic amino acid transporter 2 (.1) Lus10020320 [exp] 1221 / 0 AT1G58030 912 / 0.0 cationic amino acid transporter 2 (.1) Lus10001334 [exp] 1111 / 0 AT1G58030 973 / 0.0 cationic amino acid transporter 2 (.1) Lus10013638 [exp] 1110 / 0 AT1G58030 964 / 0.0 cationic amino acid transporter 2 (.1) Lus10020305 [exp] 764 / 0 AT1G58030 805 / 0.0 cationic amino acid transporter 2 (.1) Lus10005687 [exp] 763 / 0 AT3G03720 803 / 0.0 cationic amino acid transporter 4 (.1.2) Lus10023271 [exp] 253 / 1e-75 AT4G21120 902 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10001581 [exp] 255 / 2e-74 AT4G21120 915 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10028195 [exp] 248 / 7e-74 AT1G05940 763 / 0.0 cationic amino acid transporter 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G039700 [exp] 990 / 0 AT1G58030 924 / 0.0 cationic amino acid transporter 2 (.1) Potri.013G065000 [exp] 987 / 0 AT1G58030 873 / 0.0 cationic amino acid transporter 2 (.1) Potri.019G039600 [exp] 837 / 0 AT3G03720 797 / 0.0 cationic amino acid transporter 4 (.1.2) Potri.015G133100 [exp] 253 / 1e-75 AT4G21120 845 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.012G131300 [exp] 246 / 7e-73 AT4G21120 848 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.008G017100 [exp] 239 / 3e-70 AT3G10600 778 / 0.0 cationic amino acid transporter 7 (.1) Potri.013G030833 [exp] 236 / 3e-69 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030900 [exp] 236 / 3e-69 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.010G241000 [exp] 236 / 3e-69 AT3G10600 781 / 0.0 cationic amino acid transporter 7 (.1) Potri.002G137000 [exp] 235 / 5e-69 AT1G05940 627 / 0.0 cationic amino acid transporter 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00324 [flax] [poplar] AA_permease Amino acid permease
Representative CDS sequence Show only first row Show all	>Lus10020322 pacid=23144031 polypeptide=Lus10020322 locus=Lus10020322.g ID=Lus10020322.BGIv1.0 annot-version=v1.0 ATGGGGTTTCTGGTGGATTCGCAAAACGACGCCGGTTTCTTTGGAGGCTGCGTCAGGACTCTGATCCGGAGGAAACAGGTTGACGGCGGCGGAAATGTCC ACGGCGGCGGCCACCAACAGCTGGCCAAGGAGTTATCCGTTCTTCACCTGATCGCAATTGGAGTTGGATCGACGATTGGGGCTGGAGTTTACATATTGGT GGGGACTGTAGCGAGGGAACACTCTGGGCCAGCACTTGCTGTGTCATTTCTGATAGCTGGATTTGCTGCTGCTCTATCGGCATTCTGCTACGCTGAACTT GCTAGTCGTTGCCCTTCTGCTGGCAGTGCTTATCATTACTCTTACATTTGCGTTGGAGAAGGGGTGGCTTGGTTGGTGGGCTGGGCACTTATTCTAGAGT ACACCATTGGTGGGTCAGCAGTAGCTCGTGGAATTTCCCCGAATCTGGCATTGCTTTTTGGTGGTGAAGGAAGCCTTCCGTTTTTCTTGGCACGTCATAC AATCCCTGGGCTCGATATTGTGATCGATCCCTGTGCTGCAGTTCTAGTGTTTTTTGTTACCGGGCTCTTGTGTGTAGGAATCAAAGAGAGTACAATGGTA CAAAGCATAGTGACCACTGTCAACGTTTGTGCCATGCTGTTTGTCATAGTTGCTGGAGCTTACTTGGGTTTCAACACTGGCTGGTCTGGATATGAGCTTC CTACTGGGTACTTTCCTTTTGGTGTAGATGGTGTGCTTGCAGGATCTGCCACTGTGTTCTTTGCTTACATAGGTTTTGATTCAGTTGCCAGCACAGCAGA GGAGGTAAAGAATCCGCAACGTGACTTGCCTATGGGAATTGGGTTCGCGCTGTCCATATGCTGTTCCTTGTATATGCTGGTGTCAATGGTCGTTGTTGGT TTGGTGCCATACTACGCCATGGATCCTGATACACCCATCTCTTCTGCATTCGCAGCTCACGGCATGCAATGGGCAGCTTACATTATAACTGCTGGAGCTG TAATGGCACTTTGTTCGACTTTAATGGGGTCAATCCTACCTCAGCCTCGAATTCTAATGGCCATGGCTAGAGACGGACTGCTGCCATCATTTTTCTCCGA TGTCAACAAAAAGACTCAAGTTCCTGTCAAGGGCACGGTGGTGACTGGACTTTGTTCTGCAACTCTGGCCTTCTCTATGAATGTTGATCAATTGGCCGGC ATGGTCAGTGTGGGTACACTTCTAGCGTTCACAATGGTCGCGATTTCGGTGCTGATACTCAGATACGTGCCGCCAGACGAGGTGCCTGTTCCATCCTCGC TTCAGGAAACCATCGATAGCGTGTCATTGCAGCACAACAGAAATCGAGAGCGTTCGAATAAGAAGAAGACGAAGGTTCATGCTGGCACTTCCAAAGATTC TAAACTACCATTGCTTGGCGAAAAGAATGCATCGCCGGTTGACTGTCCTGTCCTTGTAAAAGAGGAACCTTCAGATAAATATATGTTGAGCGAAGAAAAA AGGCGAAAGATTGCTGGCTGGACGATAGCATTCACTTGTGTTGGCGCGTTTGTGCTTACATATGCAGCTTCGAATTTGTCAATCCAATGGATCCTTCGGT ATTGCTTATGTGGATTCGGCGGCGCCCTCCTCTCAACTGGCTTGATCGTGCTTACATGTATAGAGCAAGACGATGCAAGGCACAACTTTGGGCACTCGGG AGGTTTCATCTGTCCATTTGTTCCTCTCCTTCCCATCTTCTGCATCTTGATCAACACCTACCTACTCATCAACCTCGGTGGTGCAACGTGGGCTCGAGTC TCGGTGTGGCTAGGGATCGGGGTCGTGGTCTACACATTCTATGGCCGGAAAAACAGCTCATTGAAGGATGCAGTGTATGTGCCCGTAACTCATGCTGATG ATATATACGGAAGAAGACGAACCGGAGATACTTTGGCTTGA
AA sequence Show only first row Show all	>Lus10020322 pacid=23144031 polypeptide=Lus10020322 locus=Lus10020322.g ID=Lus10020322.BGIv1.0 annot-version=v1.0 MGFLVDSQNDAGFFGGCVRTLIRRKQVDGGGNVHGGGHQQLAKELSVLHLIAIGVGSTIGAGVYILVGTVAREHSGPALAVSFLIAGFAAALSAFCYAEL ASRCPSAGSAYHYSYICVGEGVAWLVGWALILEYTIGGSAVARGISPNLALLFGGEGSLPFFLARHTIPGLDIVIDPCAAVLVFFVTGLLCVGIKESTMV QSIVTTVNVCAMLFVIVAGAYLGFNTGWSGYELPTGYFPFGVDGVLAGSATVFFAYIGFDSVASTAEEVKNPQRDLPMGIGFALSICCSLYMLVSMVVVG LVPYYAMDPDTPISSAFAAHGMQWAAYIITAGAVMALCSTLMGSILPQPRILMAMARDGLLPSFFSDVNKKTQVPVKGTVVTGLCSATLAFSMNVDQLAG MVSVGTLLAFTMVAISVLILRYVPPDEVPVPSSLQETIDSVSLQHNRNRERSNKKKTKVHAGTSKDSKLPLLGEKNASPVDCPVLVKEEPSDKYMLSEEK RRKIAGWTIAFTCVGAFVLTYAASNLSIQWILRYCLCGFGGALLSTGLIVLTCIEQDDARHNFGHSGGFICPFVPLLPIFCILINTYLLINLGGATWARV SVWLGIGVVVYTFYGRKNSSLKDAVYVPVTHADDIYGRRRTGDTLA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58030		CAT2	cationic amino acid transporte...		Lus10020322 [exp]	0	1
AT1G58030		CAT2	cationic amino acid transporte...		Lus10020320 [exp]	1.0	0.9600
AT1G58030		CAT2	cationic amino acid transporte...		Lus10005671 [exp]	1.4	0.9508
AT4G32250			Protein kinase superfamily pro...		Lus10001499 [exp]	3.6	0.9054
AT2G35680			Phosphotyrosine protein phosph...		Lus10040174 [exp]	3.9	0.9320
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10043381 [exp]	3.9	0.9268
AT1G70160			unknown protein		Lus10029209 [exp]	5.3	0.9294
AT4G13630			Protein of unknown function, D...		Lus10011854 [exp]	5.5	0.9097
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10002257 [exp]	6.3	0.9119
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10021552 [exp]	6.9	0.9080
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10042229 [exp]	8.5	0.9106

Compare expression of checked genes

Lus10020322 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.