Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28220 291 / 1e-96 ATPUP3 purine permease 3 (.1) AT1G28230 259 / 4e-84 ATPUP1, PUP1 purine permease 1 (.1) AT2G33750 247 / 1e-79 ATPUP2 purine permease 2 (.1.2) AT4G18220 153 / 2e-43 Drug/metabolite transporter superfamily protein (.1) AT1G30840 152 / 2e-42 ATPUP4 purine permease 4 (.1.2) AT4G18210 142 / 9e-39 ATPUP10 purine permease 10 (.1) AT2G24220 131 / 4e-35 ATPUP5 purine permease 5 (.1.2) AT4G18205 124 / 2e-32 AT4G18200 Nucleotide-sugar transporter family protein (.1) AT1G44750 123 / 4e-32 ATPUP11 purine permease 11 (.1.2.3) AT4G18195 112 / 7e-28 ATPUP8, AT4G18200 ARABIDOPSIS THALIANA PURINE PERMEASE 8, purine permease 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015832 [exp] 591 / 0 AT1G28220 348 / 5e-119 purine permease 3 (.1) Lus10010757 [exp] 445 / 4e-157 AT1G28220 350 / 8e-120 purine permease 3 (.1) Lus10035636 [exp] 435 / 2e-153 AT1G28220 346 / 3e-118 purine permease 3 (.1) Lus10020950 [exp] 306 / 4e-102 AT1G28220 448 / 3e-158 purine permease 3 (.1) Lus10015906 [exp] 266 / 3e-87 AT1G28220 406 / 2e-142 purine permease 3 (.1) Lus10041133 [exp] 259 / 1e-84 AT1G28220 392 / 1e-136 purine permease 3 (.1) Lus10036465 [exp] 256 / 1e-82 AT1G28220 394 / 1e-136 purine permease 3 (.1) Lus10008714 [exp] 205 / 4e-63 AT1G28220 286 / 7e-95 purine permease 3 (.1) Lus10008212 [exp] 203 / 4e-62 AT1G28220 293 / 7e-97 purine permease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G160300 [exp] 327 / 9e-111 AT1G28220 413 / 8e-145 purine permease 3 (.1) Potri.002G099600 [exp] 238 / 4e-76 AT1G28220 229 / 2e-72 purine permease 3 (.1) Potri.001G147600 [exp] 152 / 1e-42 AT4G18210 315 / 7e-105 purine permease 10 (.1) Potri.001G352100 [exp] 152 / 1e-42 AT4G18210 398 / 1e-137 purine permease 10 (.1) Potri.001G352200 [exp] 151 / 3e-42 AT4G18220 315 / 1e-105 Drug/metabolite transporter superfamily protein (.1) Potri.006G184900 [exp] 140 / 3e-38 AT2G24220 404 / 6e-141 purine permease 5 (.1.2) Potri.014G043900 [exp] 140 / 4e-38 AT1G44750 434 / 2e-152 purine permease 11 (.1.2.3) Potri.003G156900 [exp] 120 / 2e-30 AT1G30840 323 / 4e-108 purine permease 4 (.1.2) Potri.001G074100 [exp] 107 / 2e-26 AT1G30840 303 / 5e-101 purine permease 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10020416 pacid=23139597 polypeptide=Lus10020416 locus=Lus10020416.g ID=Lus10020416.BGIv1.0 annot-version=v1.0 ATGGAGATGTCAAACCACAGTCAAGACCAGGAACAGATGATGAGCAAACCAATGAAGAAGGCCCTCCTAATCCTCAATTGCATCCTCCTCTCCGTCGGCA GTGCCGTCGGCCCACTCGTCCTCCGCCTCTACTTCATCAAAGGCGGCAAAGGAGTTTGGATCTCCGCCGCCACCGAAACCGCCGGCTGGCCCATGATCAT CCCAGCCCTAGTCGGGTCCTACTTATACCGCCGCAAGACCACCTACCCCGCCGCCACAAAAACCTCCTTCATCACATGGCGCCTCTTCCTCGCCTCCGCA TTCTTCGGGATCCTCACCGGACTTGACGACTTCCTCTACGCCTCTGGGGTCAACTACCTTCCCGTGTCCACTTCGTCGCTGATCATCGCCTCACAATTGG CCTTCACCGCTCTTTTTGCCTTCTTCCTCGTGAGGCAGCCGTTCACGGCGTATTCGGTGAATTCCGTGTTCCTACTTTGTGTTGGGGCTGGGACGCTGGC GATGCACGCTGGATCTGATAGGCCGGCTAATGAGACCAACGCTCAATATTTAAAAGGCTTCTTCATGACCGTAGGGGCCGCTGTGCTGTACGGGTTCGTG CTCCCCGGGATCGAGCTCACGTACAAAAAGGCTAAGCAGAACGTGAGTTACACCCTCGTCATGGAGATGCAGCTCATCATATCTTTTTTTGCCACCGCTT TCAACTTCATCGGAATGATTGCCAGCAACGAAATCCAGGAGATGGGGAAGGAAGCGGCGGGATTCGAGATGGGAGGGAAAGTGGGGTACTGGTTGGTACT GACTTGGTCCGCGATCGTATGGCAATGCTTTTTCGTGGGAGCGGTGGGTGTTGTGTCTTGCGGATCTTCTTTGCTCTCGGGAATTCTCATCGCGACCTTT CTGCCGATTACGGAGATACTGGCGGTGTTCATCTACCGCGAGAAGTTCGGTCCTGAAAAAGCGGTGGCTCTAGTGCTCTCCATTTGGGGGTTCGTTTCTT ACTTCTACGGGGAGTACAAGCAGATGAAGAAGACGACCAAAGATCCTACACTTCCTACCTTGGGTTGA
AA sequence Show only first row Show all	>Lus10020416 pacid=23139597 polypeptide=Lus10020416 locus=Lus10020416.g ID=Lus10020416.BGIv1.0 annot-version=v1.0 MEMSNHSQDQEQMMSKPMKKALLILNCILLSVGSAVGPLVLRLYFIKGGKGVWISAATETAGWPMIIPALVGSYLYRRKTTYPAATKTSFITWRLFLASA FFGILTGLDDFLYASGVNYLPVSTSSLIIASQLAFTALFAFFLVRQPFTAYSVNSVFLLCVGAGTLAMHAGSDRPANETNAQYLKGFFMTVGAAVLYGFV LPGIELTYKKAKQNVSYTLVMEMQLIISFFATAFNFIGMIASNEIQEMGKEAAGFEMGGKVGYWLVLTWSAIVWQCFFVGAVGVVSCGSSLLSGILIATF LPITEILAVFIYREKFGPEKAVALVLSIWGFVSYFYGEYKQMKKTTKDPTLPTLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10020416 [exp]	0	1
AT3G06150			unknown protein		Lus10004424 [exp]	1.0	0.9217
					Lus10019698 [exp]	2.8	0.9102
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10025819 [exp]	2.8	0.9193
AT3G14240			Subtilase family protein (.1)		Lus10037449 [exp]	7.7	0.8961
AT2G25110		AtSDF2, ATSDL, ...	ATSDF2-LIKE, Arabidopsis thali...		Lus10019365 [exp]	8.4	0.9011
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10016599 [exp]	8.7	0.9045
AT4G22560			unknown protein		Lus10028927 [exp]	8.7	0.9114
AT2G43090			Aconitase/3-isopropylmalate de...		Lus10007804 [exp]	8.9	0.8910
AT4G34120		CBSX2, CDCP1, L...	LOSS OF THE TIMING OF ET AND J...		Lus10002834 [exp]	11.0	0.8833
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10025818 [exp]	11.2	0.9043

Compare expression of checked genes

Lus10020416 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.