Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 384 / 5e-115 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 358 / 2e-104 transmembrane receptors;ATP binding (.1.2) AT5G17680 329 / 1e-94 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27180 326 / 8e-93 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G58120 273 / 1e-76 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G11170 270 / 5e-75 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 265 / 1e-73 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT2G16870 265 / 2e-73 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46260 265 / 4e-73 disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G14080 264 / 1e-72 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020537 [exp] 1834 / 0 AT1G27170 404 / 6e-121 transmembrane receptors;ATP binding (.1.2) Lus10020536 [exp] 1788 / 0 AT1G27170 392 / 8e-118 transmembrane receptors;ATP binding (.1.2) Lus10026961 [exp] 1249 / 0 AT5G36930 420 / 2e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020533 [exp] 1218 / 0 AT1G27170 405 / 1e-122 transmembrane receptors;ATP binding (.1.2) Lus10005373 [exp] 1160 / 0 AT5G36930 404 / 8e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020534 [exp] 1063 / 0 AT5G36930 414 / 1e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10010574 [exp] 924 / 0 AT5G36930 397 / 4e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10017143 [exp] 863 / 0 AT1G27180 387 / 6e-116 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10023272 [exp] 856 / 0 AT5G36930 423 / 4e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T002400 [exp] 432 / 1e-134 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 436 / 6e-134 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003942 [exp] 426 / 8e-131 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 426 / 2e-130 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T005501 [exp] 425 / 2e-130 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 425 / 2e-130 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 420 / 4e-130 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 424 / 5e-130 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 424 / 7e-130 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 422 / 4e-129 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10020524 pacid=23172299 polypeptide=Lus10020524 locus=Lus10020524.g ID=Lus10020524.BGIv1.0 annot-version=v1.0 ATGTCGAGCTCTGAGATCTCGCTCCCTCCTCTTCCAACGGGAGAGTATGAAGTTTTCTTGAGCTTCAGAGGGCCCGACGTTCGCCAAACCTTTGCCGATT GTCTGTACAGTTGCCTCGTTCGTACCAAAATCCGGACATTTAGAGACGAGGAAGAACTTCCGAGAGGGGAATTCATCGGCCCATCTATAATCCGAGCTAT CACTGAATCTAAGATCTACATCCCAATTTTTACACAGAACTATGCTTCTAGCAAATGGTGTCTCCAAGAGCTAGCTAAGATGGTGGATTGCTGGAAGAGT GGAGGAGGAGCAAAGGGACAACACATTATCCTCCCTGTTTTCTTGTTCGTTGATCCTAGAGATGTCAAACATACAGAGTCTGGTTCTTACAAGGAAGCAT TTGAAGAACACAGCCAGAAGCATGATCCAGAAACCGTATTGGAATGGAAGGAAGCACTTCAAGAGGTTGGCAAAATGAAAGGATATCACGTCACTGAGTC GGATGGACATGGATCTATAATAGACAAAATCCTCACTGAAGTTGAGTTACATTTAGGGGCTAATTACACATTAGTGACAGATGAGTTAGTGGGAATTGAT TCTCTTGTAGATGAAGTTGTGGGATTGTTGAATCTGGATTCATCGACAAGTGAGAAAATTATTGGTATCCACGGTATGGGGGGCCTCGGTAAAACTACTC TTGCAAAGGCTGTTTATGATAAAGTTTCTACAAAATTTGAGCGTTGCTACTTTTTGGAGAACATCAGAGATACATTATCAGAAAAGAATGGGGTATCAAT TCTGCAGAACAAGATTATCTCTGGTATTTTAAGGAAAGATTTTAACGAGGCTAAAAATGCTAGTGATGGAATCCGAATAATCAGAGATAGAGTTTGCAGG CACAAACTTCTTATTGTCCTTGATGATGTAGATGAGAAGTTCCAGTTCGATGATGTTTTAGGGAAATTGAACAATTTCTCAACAAATAGTCGATTTCTGA TTACCACAAGAGATGCGAGAGGTTTAGAACTCCTTCAGGAATATAAGATGTTTGAGCTTCAAGAGATGAGTCCTGATCACTCCCTTACACTTTTCAACAA ACACGCATTTGATGTGGATTGTCCTCCAAAAGATTATGCAATTTTGTCCAAGGAATTTGTACAAGCAGCGGCTGGGTTACCTCTATACATTAAGGTCATC GGGTCTCTTTTGTTTCGCATGGACAAAATATTTTGGGAAGAAAAGCTTGAAGAATTTAAAAAAATATCTCCGACTAAGGTGCAAGAGAGACTGAAAATAA GTTATAATGAGTTAACTCACAATGAGAAGCAAATCTTTCTTGATATCGCTTGTTATTTTATCGGATCACAGAAAATATACCCAATATTTATGTGGGAGGA TTGTGATTTTTATCCTGAAAGTACGATTAGATCTCTTATTCAAAGGTCATTAATAAAACTTCAGAGATCAAGAATAAAAGGTGACGTTTTAATTACGTTC TGGATGCACGATCATATTATAGATCTTGGCAGAGCCATTGTACGTGAAGAAAAAAACCAAAATCCATACAAACGTAGCAGGATATGGTCCAACAAAGATG CGGTCAACATGTTGAAACACAAAAAGGGAACAGATTGTGTGGAAGTTCTAACGGTTGATATGAAATGTGAAGATTTTATGCTTACCGACAAAGAATTTGA GAAATTGACAAGGTTAAGGTATCTTAGTGTGTCCAATGCAAGACTAGCCGGAGATTTCAAAGATGTTCTCCCAAACCTGCGTTGGCTACGATTGCAGAGT TGCGACTCAGTTCCCACTGGCCTCTACCTCAACAAGTTGGTAGATTTGGAATTAGTTGATTGCTCCGTCAGAGATGGCTGGAAAGGATGGAATGAATTGA AGGTAGCACGCAAGTTGAAAGCTGTGTTTCTAAGGAGATGCTTTAATTTGAATAAAGTTCCAGACTTTTCCGAATGTGGAGATCTGGAGTGGTTAGATTT TGATGAATGTCGGAACATGCATGGAGAAGTGGACATCGGAAACTTCAAGAGTCTAATATTTCTTCATATCTCGAATACTAAAATAACAAAGATTAAAGGT GAGATCGGAAGGTTACTAAACCTCAAAGGCCTTCTTGCTAGTGATTTGAGTTTGAAAGAAGTTCCAGCTGGAATTAGTAAGCTATCATCTCTTGAATGGT TGTCCCTGACATTAACTGATTCCTACAAGTCGGACTTCACTGAAATACTTCCCGCCAGTTTAACGGTCCTTTACATTTCCAATGATACGCAGAAATCCAG TCCGGACATTTCCTTTGACAATCTACAAAGGCTGCCAAATCTCAGCAATCTGATTAATCTGTCGATGCTAATCTTACGTGACGTCGGGATAGGTGAGATT CTTGGTCTTGGAGAGCTCAAAATGCTAGAATATCTAGTTATAGAAAGAGCTCCTAGAATAGTACATTTGGATGGTCTTGAGAATCTTATGCTTCTCAAAA CAATTAGTGTAAAAGGCTGTCCGGTCTTAGGAAAGCTGCCCAGCCTAGTAGCTTTGATCCGGTTGGAGGAACTATGGATTGAAGACTGTCCGCTTGTCAC AGAAATCAATGGTGTGGGACAACTTTGGGAATCTTTATCACACTTGAAAGTGGTTGGGTGTTCGGCCTTAACCGGTTTGGACGCACTTCACTCCATGGTG AAACTGGAATATTTGATACTGGAAGGACCTGAATTAACAGAAAGAGTAGTGTCTTCACTTTCTATATTCACCAAACTGGTGAAGCTAGGTTTATGGCATA TGTCAAGAAGACAATTTCCTGACCTCTCCAATCTCAAGAATCTAAGAGCATTAGCCTTGAGTTTCTGCGAAGAGTTGATTGAGGTTCCTGCCCTCGATAC GTTGGAGTCGTTGGAATATCTATCTCTGAAAGGGTGCCAGTCGATTAGAAAAGTACCGGATCTCTCTGGTCTGAAAAAGCTGAAAACATTAGATGTCGAG GGGTGCATACAGTTGAAAGAGGTCGGGGGGCTCGAAAGATTAGAGTCATTGGAAGAACTAAAGATGTCCGGTTGCGAGTCGATTGAGGAGTTGCCGAATC TATCTGGTCTGAAAAATTTGAGAGAATTACTTCTCAAGGGATGCATACAGTTGAAAGAGGTGAATGGACTTGAGGGGTTGGAGCTGACTGTTTTTGAAGC ACGCAAAAGGATAAAAGCCAAGTACGTAATGAAATCGTTTGCAAGGCACGGGAAGTATCCATGGCTGTTGATCGGCGGCATGATAATACTGTAG
AA sequence Show only first row Show all	>Lus10020524 pacid=23172299 polypeptide=Lus10020524 locus=Lus10020524.g ID=Lus10020524.BGIv1.0 annot-version=v1.0 MSSSEISLPPLPTGEYEVFLSFRGPDVRQTFADCLYSCLVRTKIRTFRDEEELPRGEFIGPSIIRAITESKIYIPIFTQNYASSKWCLQELAKMVDCWKS GGGAKGQHIILPVFLFVDPRDVKHTESGSYKEAFEEHSQKHDPETVLEWKEALQEVGKMKGYHVTESDGHGSIIDKILTEVELHLGANYTLVTDELVGID SLVDEVVGLLNLDSSTSEKIIGIHGMGGLGKTTLAKAVYDKVSTKFERCYFLENIRDTLSEKNGVSILQNKIISGILRKDFNEAKNASDGIRIIRDRVCR HKLLIVLDDVDEKFQFDDVLGKLNNFSTNSRFLITTRDARGLELLQEYKMFELQEMSPDHSLTLFNKHAFDVDCPPKDYAILSKEFVQAAAGLPLYIKVI GSLLFRMDKIFWEEKLEEFKKISPTKVQERLKISYNELTHNEKQIFLDIACYFIGSQKIYPIFMWEDCDFYPESTIRSLIQRSLIKLQRSRIKGDVLITF WMHDHIIDLGRAIVREEKNQNPYKRSRIWSNKDAVNMLKHKKGTDCVEVLTVDMKCEDFMLTDKEFEKLTRLRYLSVSNARLAGDFKDVLPNLRWLRLQS CDSVPTGLYLNKLVDLELVDCSVRDGWKGWNELKVARKLKAVFLRRCFNLNKVPDFSECGDLEWLDFDECRNMHGEVDIGNFKSLIFLHISNTKITKIKG EIGRLLNLKGLLASDLSLKEVPAGISKLSSLEWLSLTLTDSYKSDFTEILPASLTVLYISNDTQKSSPDISFDNLQRLPNLSNLINLSMLILRDVGIGEI LGLGELKMLEYLVIERAPRIVHLDGLENLMLLKTISVKGCPVLGKLPSLVALIRLEELWIEDCPLVTEINGVGQLWESLSHLKVVGCSALTGLDALHSMV KLEYLILEGPELTERVVSSLSIFTKLVKLGLWHMSRRQFPDLSNLKNLRALALSFCEELIEVPALDTLESLEYLSLKGCQSIRKVPDLSGLKKLKTLDVE GCIQLKEVGGLERLESLEELKMSGCESIEELPNLSGLKNLRELLLKGCIQLKEVNGLEGLELTVFEARKRIKAKYVMKSFARHGKYPWLLIGGMIIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27170			transmembrane receptors;ATP bi...		Lus10020524 [exp]	0	1
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Lus10031723 [exp]	1.0	0.9368
AT2G45910			U-box domain-containing protei...		Lus10036363 [exp]	2.0	0.8866
AT1G27170			transmembrane receptors;ATP bi...		Lus10020537 [exp]	2.4	0.8378
AT1G69550			disease resistance protein (TI...		Lus10018308 [exp]	3.5	0.8242
AT2G45910			U-box domain-containing protei...		Lus10014771 [exp]	3.9	0.8662
AT5G44510		TAO1	target of AVRB operation1 (.1)		Lus10001537 [exp]	6.3	0.8441
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10021185 [exp]	7.1	0.8421
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10018828 [exp]	7.2	0.8186
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10001258 [exp]	8.9	0.8293
AT5G57910			unknown protein		Lus10036591 [exp]	9.4	0.8340

Compare expression of checked genes

Lus10020524 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.