Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 395 / 6e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 370 / 1e-108 transmembrane receptors;ATP binding (.1.2) AT5G17680 352 / 2e-102 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27180 350 / 4e-101 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G69550 313 / 8e-89 disease resistance protein (TIR-NBS-LRR class) (.1) AT2G14080 304 / 3e-86 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G38340 300 / 1e-85 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G38850 295 / 2e-84 Disease resistance protein (TIR-NBS-LRR class) (.1) AT5G41540 293 / 2e-83 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 288 / 3e-82 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020534 [exp] 1439 / 0 AT5G36930 414 / 1e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10026961 [exp] 1318 / 0 AT5G36930 420 / 2e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020536 [exp] 1264 / 0 AT1G27170 392 / 8e-118 transmembrane receptors;ATP binding (.1.2) Lus10020524 [exp] 1244 / 0 AT1G27170 395 / 9e-119 transmembrane receptors;ATP binding (.1.2) Lus10020537 [exp] 1227 / 0 AT1G27170 404 / 6e-121 transmembrane receptors;ATP binding (.1.2) Lus10005373 [exp] 1134 / 0 AT5G36930 404 / 8e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10010574 [exp] 978 / 0 AT5G36930 397 / 4e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10035674 [exp] 974 / 0 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004911 [exp] 929 / 0 AT1G27170 387 / 5e-115 transmembrane receptors;ATP binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T002200 [exp] 436 / 6e-136 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 431 / 2e-132 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 431 / 3e-132 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 425 / 7e-132 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.005G206400 [exp] 424 / 7e-132 AT5G36930 587 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 430 / 1e-131 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 426 / 4e-131 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 427 / 8e-131 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 424 / 6e-130 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G004599 [exp] 422 / 5e-129 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10020533 pacid=23172272 polypeptide=Lus10020533 locus=Lus10020533.g ID=Lus10020533.BGIv1.0 annot-version=v1.0 ATGATGAGATCCGACTCTGATAGCTCCATCGGCTCTTTTCTTTCGCGTTCGTCTGTCGATCCGACATTACCCCTTCTTCCATCTGGAGAGTATGAGGTTT TCTTGAGCTTTAGAGGCCCAGATGTCCGCCAAACTTTTGCTGACCATCTGTACGCATGGCTTGTTCGTTCCAAAATCCGCACATTTAGAGACGAGGAAGG ACTCCAGAAGGGGGAAACTATTGGCTCATCTCTAATCCAAGCTATTACTGAATCTAAGATCTATATTCCAATCTTAACACAGAACTATGCTTCTAGTAAA TGGTGTCTCCAGGAGCTAGCTAAGATGGTGGATTGCTGGAAGAATGGAGGAGGAGGAAAGGGACAACACATCATCCTCCCTGTTTTCTATTTCATGGACC CTAGAGATGTTCGACATCCGGATTCTGGTCCTTACAAGGAAGCATTTGAACAACACAACATGAAACATGATCCGGAAACCATATTGGAATGGAAGGAAGC ACTCCAAGACGTTGGCAAAATGAAAGGATGGCATATCAACGAGTTAACTGGACAAGGAGCCGTTGTTGACAAAATTTTCACCACAATTGAGTTCCACCTT AGGGCTAATTATACATTAGCCACTGATGAGTTGGTGGGAATTGATTCCTCCGTAGAAGAAGTTATGGAACTAATGAATCTGGACCACTCTACAAGTGAGA GAATTATTGGCATTTATGGTATGGGCGGCCTTGGTAAGACCACTCTAGCAAAGGCTGTTTTTAACCAAGTTTCTATGCAATTTGAGCGTTGTTGTTTTCT AGATAACATAAGAGAGACATTGTTGAGAAATGATGGGGTGGTAGCTCTACAGAATAAGGTCATCTCTGACATTCTAAGGAAAGATTCTGATCAAGCTAAA AATGCTAGTGACGGAGTCCGAATAATTAGAGAGAGAGTTAGGAGGCACAAAATATTTGTTGTCCTTGATGACATAGATGAAAGCTTTCACTTTGACGAAA TCTTTGGGAAGTTAGGCGATTTTTCGACAGATAGTCGATTTCTTATTACAACCAGAGATGCAAGAACGTTGGAACTTCTTAATGAATGTAAGATGTTTGG GCTTGAAGAAATGAGTCATGATCACTCCCTTCAACTTTTTAGCAAACATGCTTTCGGAGTAGATTATCCTCCAGAAGATTATGCAAGTCTATGCGAGGAA TTTATACAAGTTGCATCAGGCCTGCCTTTGGCCCTAAAGGTCATAGGGTCACTTTTGTTTAAATCAGACAAAAGATTTTGGGAAGATAAATTGATAGAAC TCAAAGCAATACCTTCGGCGAAGGTGCAAGAGCGGTTGAAAGTAAGTTATAATGAGTTGACTCACAATGAGAAGCAAATCTTTCTCGATATTGCATGTCT CTTTGTTGGAGCAAAGAAAGAAGTACCAATGTATATGTGGAGTGACTGTGATTTGTACCCTGCAAGTACATTGAGGACTCTTGTTCAGAGGTCTCTAGTA AGAATGGACGATAATAAAATTTTTTGGATGCATGATCATATTAGAGACCTTGGTAGAACCATTGTTCGTGAAGAAAATAGTCAAAATCCGTACAAGCGCA GCAGGATATGGTCCAACAATGATGCCATCGACATACTAAAAAATAGAGAGGGAAATGATTGTGTGGAAGCTCTTAGAGTTGATATGAAAGGCGAAGGTTA TGCACTCACAAACAAAGAATTTAATCAATTCTCAAGGTTAAGGTTTCTTGAAGTATTGAATGGAGATCTATCTGGAAATTTCAAAAACATTCTTCCGAAT CTACGTTGGCTAAGAGTCTATCGCGGTGATCCAAGTCCTTCTGGACTTAACCTAAATAAGTTGGTTATTCTGGAGTTGGACGGTTGCTATGTGACACATA GCTGGAAAGGATGGAATGAAATCAAGGCAGCAGGCAAGTTGAAAGTTGTGAATTTAACGTCGTGCGGAATCCTGGAAAAAGTTCCAGACTTGTCCACTTG CAGAGGTCTAGAGTTGTTATGTTTTCACAAATGTCAATGGATGCGCGGAGAGCTGGACATCGGGACCTTTAAGGATCTAAAAGTGCTTGATATCAACCAG ACTGAAATAACAACGATAAAAGGAGAGGTAGAAAGTTTACAAAATCTCCAACAGCTTGATGTTGGCCGTTCAGGTTTGATAGAAGTGCCTGCTGGAATTA GCAAGTTATCCTCTCTTGAATTCTTGGACCTGACTAGTGTTAAGCACGACGAGGTAGAAATGCTTCCCAATGGTTTAAAGCTCCTTGTCATCTCATCCTT TTCCCTCTCTGCCCTCCCATCATCTCTGATCAAGTTGGACATTTGTGACTCCCGAAATCTGCAAAGGCTGCCGAATCTTGCGAGTGTGACTAATCTGACT AGACTGCATCTAAAAGAGGTCGGGATACATGAGATTCCAGGTCTAGGGAAGCTGAAACTGCTGGAAAGTCTATCTATATGCAATGCTCCAAATTTGGATA ATTTGGATGGTCTTGAGAATCTGGTGCTTCTTAAAGAACTGGCTCTTGAAAGATGCCCCATCCTGGGAAAACTACCGAGCCTAGCTGAGTTGACAAAGCT CCATAAAGTAGTGATTAGATGGTGTGACGTTCTGGGTGAAATCTATGGTCTGGGAAATCTTGGTGATTCCTTATCACATCTGGATATTAGTTGGTGTCCC CGTTTAACAGTTATGGATTTACTTCATTCCTTGCTAAAACTGGGAACGTTGGTATCGTCAGGGTTTGAGTTGACAAATATACTGCCCCTGTCGCTATCCA TTTATACCAAACTCAGGACGCTAGAAGTACGGAGTTCACAACTTCCAGACCTCACTAATCTCAAGAACCTTAGAGATTTGACGATTACTGGATGCAGAGA GTTGATCGAGATTGCTGGGCTCCATACATTGGAGTCGTTAGAAGAGCTGAGTATGGAGCGTTGCCCCTCAGTTAGGAAGTTAGATCTCGCTGGCCTCATA AAGTTGAAAACCATACATATCCACATTTGCACACGATTGACTGAGATCAGGGGACTCGGGGGATTAGAGTCGTTGCAAATGCTGTTTATGTCAGGTTGCC AGTCGATTAAGGAGTTGCCGAATCTATCTGGTTTGAAAAATTTGAAATATTTTAGTCTAAAGGAATGCAGACAGTTGAAAGAGGTGAATGGGCTTGAGGA ATTGGAGTGGCTAGACTTCAACACGGACAGGAGGCTAAAATTGAAGTATCTACTTAAATTGGTTTCAAGAAAAGGGAAGCAGTTAGTAACTCAGTCAGCT CGCAGGGTTCTCTTCATCAACAATTGA
AA sequence Show only first row Show all	>Lus10020533 pacid=23172272 polypeptide=Lus10020533 locus=Lus10020533.g ID=Lus10020533.BGIv1.0 annot-version=v1.0 MMRSDSDSSIGSFLSRSSVDPTLPLLPSGEYEVFLSFRGPDVRQTFADHLYAWLVRSKIRTFRDEEGLQKGETIGSSLIQAITESKIYIPILTQNYASSK WCLQELAKMVDCWKNGGGGKGQHIILPVFYFMDPRDVRHPDSGPYKEAFEQHNMKHDPETILEWKEALQDVGKMKGWHINELTGQGAVVDKIFTTIEFHL RANYTLATDELVGIDSSVEEVMELMNLDHSTSERIIGIYGMGGLGKTTLAKAVFNQVSMQFERCCFLDNIRETLLRNDGVVALQNKVISDILRKDSDQAK NASDGVRIIRERVRRHKIFVVLDDIDESFHFDEIFGKLGDFSTDSRFLITTRDARTLELLNECKMFGLEEMSHDHSLQLFSKHAFGVDYPPEDYASLCEE FIQVASGLPLALKVIGSLLFKSDKRFWEDKLIELKAIPSAKVQERLKVSYNELTHNEKQIFLDIACLFVGAKKEVPMYMWSDCDLYPASTLRTLVQRSLV RMDDNKIFWMHDHIRDLGRTIVREENSQNPYKRSRIWSNNDAIDILKNREGNDCVEALRVDMKGEGYALTNKEFNQFSRLRFLEVLNGDLSGNFKNILPN LRWLRVYRGDPSPSGLNLNKLVILELDGCYVTHSWKGWNEIKAAGKLKVVNLTSCGILEKVPDLSTCRGLELLCFHKCQWMRGELDIGTFKDLKVLDINQ TEITTIKGEVESLQNLQQLDVGRSGLIEVPAGISKLSSLEFLDLTSVKHDEVEMLPNGLKLLVISSFSLSALPSSLIKLDICDSRNLQRLPNLASVTNLT RLHLKEVGIHEIPGLGKLKLLESLSICNAPNLDNLDGLENLVLLKELALERCPILGKLPSLAELTKLHKVVIRWCDVLGEIYGLGNLGDSLSHLDISWCP RLTVMDLLHSLLKLGTLVSSGFELTNILPLSLSIYTKLRTLEVRSSQLPDLTNLKNLRDLTITGCRELIEIAGLHTLESLEELSMERCPSVRKLDLAGLI KLKTIHIHICTRLTEIRGLGGLESLQMLFMSGCQSIKELPNLSGLKNLKYFSLKECRQLKEVNGLEELEWLDFNTDRRLKLKYLLKLVSRKGKQLVTQSA RRVLFINN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27170			transmembrane receptors;ATP bi...		Lus10020533 [exp]	0	1
AT5G46680			Pentatricopeptide repeat (PPR-...		Lus10027024 [exp]	1.7	0.8664
AT5G47860			Protein of unknown function (D...		Lus10042222 [exp]	4.5	0.8487
AT3G22260			Cysteine proteinases superfami...		Lus10027312 [exp]	6.2	0.8334
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Lus10034997 [exp]	6.3	0.8426
AT5G66900			Disease resistance protein (CC...		Lus10034761 [exp]	6.5	0.8519
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10038337 [exp]	8.1	0.8477
AT3G21700		ATSGP2	Ras-related small GTP-binding ...		Lus10039670 [exp]	11.2	0.8432
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10005420 [exp]	11.8	0.8275
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10012144 [exp]	12.1	0.7974
AT5G16110			unknown protein		Lus10028474 [exp]	13.2	0.8472

Compare expression of checked genes

Lus10020533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.