Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 398 / 5e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 364 / 7e-106 transmembrane receptors;ATP binding (.1.2) AT5G17680 340 / 7e-98 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27180 343 / 9e-98 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G41540 307 / 9e-88 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G38850 305 / 2e-87 Disease resistance protein (TIR-NBS-LRR class) (.1) AT5G61760 280 / 2e-85 ATIPK2BETA ARABIDOPSIS THALIANA INOSITOL POLYPHOSPHATE KINASE 2 BETA, inositol polyphosphate kinase 2 beta (.1) AT5G07370 275 / 7e-84 ATIPK2A, IPK2a inositol polyphosphate kinase 2 alpha (.1.2.3.4) AT5G41750 296 / 1e-83 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G41550 293 / 1e-82 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020533 [exp] 1457 / 0 AT1G27170 405 / 1e-122 transmembrane receptors;ATP binding (.1.2) Lus10026961 [exp] 1129 / 0 AT5G36930 420 / 2e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020536 [exp] 1105 / 0 AT1G27170 392 / 8e-118 transmembrane receptors;ATP binding (.1.2) Lus10020537 [exp] 1087 / 0 AT1G27170 404 / 6e-121 transmembrane receptors;ATP binding (.1.2) Lus10020524 [exp] 1079 / 0 AT1G27170 395 / 9e-119 transmembrane receptors;ATP binding (.1.2) Lus10005373 [exp] 1001 / 0 AT5G36930 404 / 8e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10035674 [exp] 911 / 0 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10010574 [exp] 874 / 0 AT5G36930 397 / 4e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10042714 [exp] 847 / 0 AT5G36930 411 / 3e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T002400 [exp] 436 / 2e-135 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 440 / 2e-134 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 438 / 4e-134 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 437 / 1e-133 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 436 / 2e-133 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 426 / 2e-131 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.005G206400 [exp] 422 / 2e-130 AT5G36930 587 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 425 / 2e-129 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 425 / 4e-129 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 422 / 5e-129 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain CL0016 [flax] [poplar] PKinase PF03770 [flax] [poplar] IPK Inositol polyphosphate kinase
Representative CDS sequence Show only first row Show all	>Lus10020534 pacid=23172348 polypeptide=Lus10020534 locus=Lus10020534.g ID=Lus10020534.BGIv1.0 annot-version=v1.0 ATGAGATCCGACTCTGATGGTTCCATCGACTCTTTCCATTCACGTTGGTCTGTCGATCCGACATTACTCCCTCTTCCATCTGGAGAGTATGAGGTTTTCT TGAGCTTTAGAGGCCCAGATGTCCGCCAAACTTTTGCTGACCATCTGTACACAAGCCTTGTTCGTTCCAAAATCCGCACATTTAGAGACGAGGAAGGACT CCAGAAGGGGGAAACTATTGGCCCATCTCTAATCCAAGCTATTACTGAATCTAAGATCTACATTCCAATCTTAACACAGAACTATGCTTCTAGTAAATGG TGTCTCCAGGAGCTAGCTAAGATGGTGAATTGTTGGAAGAATGGAGGAGAAGCAAAGGGACAACACATCATCATCCCTGTTTTCTATTTCATGGATCCTA GAGATGTTCGACACCCGGATTCTGGTCCTTACAAGGAATCATTTGAACAACATAACTTGAAGCATGATCCAGAAACCATCCTGGAATGGAAGGGAGCACC CCAAGAGGTTGGGAAAATGAAAGGATGGCATATCAGCGAGTTAACTGGACAAGGAGCTGTTGTAGACAAAATCTTTACCGATGTCGAGTTGCACCTTAGG GCTAATTATACATTAGCAACTGACGAGTTGGTGGGAATCGATTTTTCCGTAGAAGAGGTGGTGAAATTATTGAATCTGGACTCTACAAGTGAGAAAATTA TTGGCATTTACGGTATGGGAGGGCTTGGTAAGACCACTCTAGCAAAGGCTGTTTATAACAAAGTTTCTATGCAATTTGAACGGTGTTGTTTTCTCAATAA CATAAGAGAGGCATTGTTGAAAAATGATGGGGTGGTAGCTCTACAGAATAAGGTCATCTCTGACATTCTAAGGAAAGATTTTGGCCAGGCTAAAAATGCT AGCGATGGAGTCCAAATGATACGAGAGAGAGTTAGCAGGCACAAAATTTTTGTTGTCCTTGATGATGTAAATGAAAGCTTTCGCTTTGACGATATCTTCG GAAAATTAACCGCATTTTCAGCAGATAGTCGGTTTCTTGTTACAACAAGAGATGCAAGAACTTTGGAACGTCTTCGAGGATGTAAACTGTTTAAGCACGA AGGAATGAGTCATGATCACTCTCTTAAACTTTTTAGCAAACATGCTTTTGGGGTGGATTATCCTCCGGAAGATTATGCAAGTCTATGCGAGGAATTTGTG CAGGTTGGATCAGGGCTACCTTTGGCCCTCAAGGTCATAGGGTCACTTTTGTTTAGAACAGAGAAAAGTTTTTGGGAAGATAAGTTGATAGAACTAAAAG CAATACCTGCAGTCGAGGTGCAGGACAGATTGAAAATAAGTTATAATGAGTTGACTGACAACGAGAAGCAAATCTTTCTCGATGTTGCATGTTTCTTTGT TGGAGCAAAGAAAGAAATACCAATGTATATGTGGAGTGACTGTGGCTTTTATCCAACAACTACAATTAGGACTCTTGTTCAGAGGTCTCTAGTAAGAATC AATGATAACGAAGAGTTTTGGATGCATGATCATATTAGAGACCTTGGCAGAGCCATTGTTCGCGAAGAAAGTCAAAATCCGTACAAGCGTAGTAGGATAT GGTCCAACAACGATGCCATCGACATACTGAAAAATAGAGAGGGAAATGATTGTGTGGAAGCTCTTAGAGTTGATATGAGAGGCGAAGGTTTTGCACTCAC AGACGAAGAATTTAAGCAATTCTCAAGGTTAAGGTTTCTTGAAGTATTGAATGGAGATCTGTCTGGAAATTTCAAAAACGTACTTCCAAGTCTACGTTGG CTGAGAGTCTATCACGGTGATCCACGTCCTTCTGGTCTTAACCTAAATAAGTTGATGATTTTGGAGTTGGAGGTCTCGGATGTGACAGACAGCTGGGAAG GATGGAATGAAATCAAGGCAGCAGGCAAATTGAAAGTTGTGCATCTGATGTGTTGCAAAGGCCTGGAAAAAGTTCCAGACTTGTCCACTTGCAGAGGTCT AGAGTTGTTACGTTTTAGCATATGTAGACGGATGCATGGAGAGCTGGACATCGGGAACTTCAAGGATCTAAAAGTGCTTGATATCTTCCAGACTAGAATA ACGGCGTTAAAAGGACAGGTTGAAAGTTTACAAAATCTCCAACAGCTTGATGTTGGCTCTTCAGGTTTGATAGAAGTGCCTGCTGGAATTAGCAAGTTAT CCTCTCTGGAATACTTGAACCTGACCAATATTAAGCATGACAAGGTAGAAACGCTTCCCAATGGTTTAAAGATCCTTCTCATCTCATCCTTTTCCCTCTC TGCCCTCCCATCATCTCTGTTCCGGTTAGACGTTCGTTACTCTACTAATCTGCGAAGGCTTCCGAATCTTGCGAGTGTGACTAATCTGACTAGACTGCGT CTAGAAGAGGTTGGGATACATGGGATTCCTGGTCTAGGGGAGCTGAAGTTGCTAGAGTGTCTATTTCTACGTGATGCGCCAAATTTGGATAATTTGGATG GTCTTGAGAATCTTGTGCTACTTAAAGAACTGGCTGTTGAAAGATGCCGCATCCTGGAAAAATTACCCAGTCTAGCAGAGTTGACAAAGCTCCATAAACT AGTGATTGGACAGTGTAACATTCTGGGTGAAATCTGTGGTCTGGGAAATCTTGGGGAGTCCTTATCACATCTGGAGATCAGTGGGTGTCCCTGTTTAACA GTTGTGGAGTCACTTCATTCCTTGCTAAACCTGGGAACGTTGGAATTGTCAGGGTTAAGAAGATCAAGGACAAAAGACTCTAACTTCTTTCTGATTCTCT CCAAAGGCATGCTCAAAGTTCCAGAACACCAGGTAGCTGGACATCAAGACATCAACGGGCTCCTCGGTCCTCTCGTAGATGATTCGGGGCGATTCTACAA GCCACTTCAGGGCGATGAACTTGGCGCCACGGAGATTGCATTCTACACATCGTTTTCTACTAACAAAACGATTCCACAACACGTCCGGAGGTTTTTCCAG GCCTTCAGGGCACTCAAAGTATCGAGGCTTCTGATGGATCTGGCCTCCAACGCACCTCATCTTAGAAGATCTCACGTCGACTCGACATGGTACCTTGAGG CATCTCAAGCCTATATTGAGAAATGCCTGAAGAAGGATGTGGAATCCAGCAATCCGTTGCTCGGGTTTAGGATATCTGGATTGCAGGTTTACGGTAACGG CAAAGAATCATCGGAGGTGGTCTTGAAGCCTGAGAGGAAGCTTCTCCTGAATCTGAATGCTGATGAAGTTAGGCTGGTGCTTAAACGGTTTGTTTCCTCC AACCTAAAGTCGGACCAACCGGATTGTTCGTTTGCAGCAGTCGTTTCCAGTGGCTCGAATGGGATCTTGGCTCAGTTGCTTGAGCTGAAGGCGTGGTTTG AGGATCAAACCATCTATCATTTCAACTCTTGTTCTGTTCTTATGCTGTATGAGGAGAAGACAAAGATGGTGAATGGAGGAGGAGAGAGTTCTGCCGGTGC TGTGGTGAAGCTCATCGATTTTGGTCATGTCACGGAGGGAAATGGCATTATCGATCACAACTTTCTCGGAGGGCTCTGCTCATTGATAAAGTTCATTTCC GATAATCAGATCATGTTGTAG
AA sequence Show only first row Show all	>Lus10020534 pacid=23172348 polypeptide=Lus10020534 locus=Lus10020534.g ID=Lus10020534.BGIv1.0 annot-version=v1.0 MRSDSDGSIDSFHSRWSVDPTLLPLPSGEYEVFLSFRGPDVRQTFADHLYTSLVRSKIRTFRDEEGLQKGETIGPSLIQAITESKIYIPILTQNYASSKW CLQELAKMVNCWKNGGEAKGQHIIIPVFYFMDPRDVRHPDSGPYKESFEQHNLKHDPETILEWKGAPQEVGKMKGWHISELTGQGAVVDKIFTDVELHLR ANYTLATDELVGIDFSVEEVVKLLNLDSTSEKIIGIYGMGGLGKTTLAKAVYNKVSMQFERCCFLNNIREALLKNDGVVALQNKVISDILRKDFGQAKNA SDGVQMIRERVSRHKIFVVLDDVNESFRFDDIFGKLTAFSADSRFLVTTRDARTLERLRGCKLFKHEGMSHDHSLKLFSKHAFGVDYPPEDYASLCEEFV QVGSGLPLALKVIGSLLFRTEKSFWEDKLIELKAIPAVEVQDRLKISYNELTDNEKQIFLDVACFFVGAKKEIPMYMWSDCGFYPTTTIRTLVQRSLVRI NDNEEFWMHDHIRDLGRAIVREESQNPYKRSRIWSNNDAIDILKNREGNDCVEALRVDMRGEGFALTDEEFKQFSRLRFLEVLNGDLSGNFKNVLPSLRW LRVYHGDPRPSGLNLNKLMILELEVSDVTDSWEGWNEIKAAGKLKVVHLMCCKGLEKVPDLSTCRGLELLRFSICRRMHGELDIGNFKDLKVLDIFQTRI TALKGQVESLQNLQQLDVGSSGLIEVPAGISKLSSLEYLNLTNIKHDKVETLPNGLKILLISSFSLSALPSSLFRLDVRYSTNLRRLPNLASVTNLTRLR LEEVGIHGIPGLGELKLLECLFLRDAPNLDNLDGLENLVLLKELAVERCRILEKLPSLAELTKLHKLVIGQCNILGEICGLGNLGESLSHLEISGCPCLT VVESLHSLLNLGTLELSGLRRSRTKDSNFFLILSKGMLKVPEHQVAGHQDINGLLGPLVDDSGRFYKPLQGDELGATEIAFYTSFSTNKTIPQHVRRFFQ AFRALKVSRLLMDLASNAPHLRRSHVDSTWYLEASQAYIEKCLKKDVESSNPLLGFRISGLQVYGNGKESSEVVLKPERKLLLNLNADEVRLVLKRFVSS NLKSDQPDCSFAAVVSSGSNGILAQLLELKAWFEDQTIYHFNSCSVLMLYEEKTKMVNGGGESSAGAVVKLIDFGHVTEGNGIIDHNFLGGLCSLIKFIS DNQIML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10020534 [exp]	0	1
AT1G68940			Armadillo/beta-catenin-like re...		Lus10029113 [exp]	4.5	0.9173
AT1G01750		ADF11	actin depolymerizing factor 11...		Lus10008489 [exp]	5.3	0.9008
AT5G07610			F-box family protein (.1)		Lus10024021 [exp]	6.2	0.8606
AT5G36930			Disease resistance protein (TI...		Lus10018972 [exp]	7.9	0.8848
AT5G01750			Protein of unknown function (D...		Lus10009094 [exp]	9.5	0.8383
					Lus10040954 [exp]	11.7	0.8986
AT4G12020	WRKY	MEKK4, MAPKKK11...	MAPK/ERK KINASE KINASE 4, MITO...		Lus10016282 [exp]	15.6	0.8507
AT3G24200			FAD/NAD(P)-binding oxidoreduct...		Lus10011740 [exp]	16.7	0.8855
AT1G48635		PEX3-2, PEX3	PEROXIN 3-2, peroxin 3 (.1.2)		Lus10018002 [exp]	19.8	0.8813
AT2G44290			Bifunctional inhibitor/lipid-t...		Lus10033076 [exp]	22.3	0.8800

Compare expression of checked genes

Lus10020534 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.