Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 392 / 1e-117 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 380 / 4e-112 transmembrane receptors;ATP binding (.1.2) AT5G17680 350 / 6e-102 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27180 349 / 1e-100 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G69550 334 / 5e-96 disease resistance protein (TIR-NBS-LRR class) (.1) AT2G14080 303 / 8e-86 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G44510 292 / 2e-82 TAO1 target of AVRB operation1 (.1) AT4G12010 285 / 1e-79 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16950 285 / 3e-79 RPP5 RECOGNITION OF PERONOSPORA PARASITICA 5, Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT4G16890 283 / 7e-79 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020537 [exp] 1930 / 0 AT1G27170 404 / 6e-121 transmembrane receptors;ATP binding (.1.2) Lus10020524 [exp] 1851 / 0 AT1G27170 395 / 9e-119 transmembrane receptors;ATP binding (.1.2) Lus10020533 [exp] 1310 / 0 AT1G27170 405 / 1e-122 transmembrane receptors;ATP binding (.1.2) Lus10026961 [exp] 1302 / 0 AT5G36930 420 / 2e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10005373 [exp] 1222 / 0 AT5G36930 404 / 8e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020534 [exp] 1142 / 0 AT5G36930 414 / 1e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10035674 [exp] 1012 / 0 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10010574 [exp] 994 / 0 AT5G36930 397 / 4e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10037406 [exp] 949 / 0 AT5G36930 395 / 5e-116 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G052000 [exp] 440 / 2e-135 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 434 / 2e-135 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003942 [exp] 437 / 6e-135 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T005501 [exp] 436 / 4e-134 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 427 / 7e-133 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 432 / 8e-133 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 423 / 3e-130 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 424 / 8e-130 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 424 / 1e-129 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 422 / 5e-129 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10020536 pacid=23172368 polypeptide=Lus10020536 locus=Lus10020536.g ID=Lus10020536.BGIv1.0 annot-version=v1.0 ATGATGAGATCCGATTCCAATGGCTCCACCGACTCTTTCCATTCGTGTTCGTCTGCCGATTTGACACCCACCTCTCTTCCGTCTGGAGAGTATGAGGTTT TTTTGAGCTTTAGAGGCCTAGATGTCCGCAAAACTTTTGCTGACCATCTGTATACAAGCCTTGTTCGTTCCAAATTCCGCACATTTAGAGACGAGGAAGA GCTGGAAAAGGGGGAAACTATTGGACCATCTCTAATCCGAGCTATCACTGAATCTAAGATCTACATCCCGATCTTGACACAGAACTATGCTTCTAGCAAA TGGTGTCTCCAAGAGCTGGCTAAGATGGTGGAATGCTGGAAGAGTGGAGGAGGAGCAAAGGGACAACACATCATCCTCCCTGTTTTCTTGTTCGTTGATC CTAGAGATGTCAGACATACAGAGTCTGGTTCTTACAAGGAAGCATTTGAACAACACAGCCAGAAGCATGATCCAGAAACCGTATTGGAATGGAAGGAAGC ACTTCAAGAGGTTGGCAAAATGAAAGGATATCACGTCACTGAGTCGGATGGACATGGATCTATAATAGACAAAATCCTCACTGAAGTTGAGTTACATTTA GGGGCTAATTACGCATTAGTGACAGATGAGTTAGTGGGAATTGATTCTCTTGTAGATGAAGTTGTGGGATTGTTGAATCTGGATTCATCGACAAGTGAGA AAATTATTGGTATCCACGGTATGGGGGGCCTCGGTAAAACTACTCTTGCAAAGGCTGTTTATGATAAAGTTTCTACAAAATTTGAGCGTTGCTACTTTTT GGAGAACATCAGAGATACATTATCAGAAAAGAATGGGGTATCAATTCTGCAGAACAAGATTATCTCTGGTATTTTAAAGAAAGATTTTAACGAGGCTAAA AATGCTAGTGATGGAATCCGGATAATCAGAGATAGAGTTTGCAGGCACAAACTTCTTATTGTCCTTGATGATGTAGATGAGAAGTTCCAGTTCGATGAGG TTTTAGGGAAATTGAACAATTTCTCAATGGATAGTCGATTTCTCATTACCACAAGAGATGCGAGAGGTTTAGAACTCCTTCGAGAATGTAAGATGTTTGA GCTTCAAGAGATGAGTCCTGATCACTCCCTTACACTTTTCAACAAAAACGCATTTGGTGTGGATTTTCCTCCAAAAGATTATGCAATTTTGTCCAACGAA TTTGTACAAGCGGCTGCTGGGTTACCTTTATACATTAAGGTCATCGGGTCCCTTTTGTTTCGCATGGACAAAATATTTTGGGAAGAAAAGCTTGAAGAAT TTAAAAAAATATCTCCGACTAAGGTGCAAGAGAGATTGAAAATAAGTTATAACGAGTTAACTTACAATGAGAAGCAAATCTTTCTTGATATTGCTTGTTA TTTTATTGGATCATACAAAATCGAACCAATGCGAATGTGGAGCGACTGTGATTTTTATCCTGAAAGTACGATTAGATCTCTTATTCAAAGGTCATTAATA AAATTTCAGAGATCAAGAATAAAAAGTGACATTTTAAATACGTTCTGGATGCACGATCATATTATAGATCTTGGCAGAGCCATTGTTCGTGAAGAAAATA ATAAAAAACCATACAAACGTAGCAGGATATGGTCCAACAAGGATGCCATCGACATGCTAAAACACAAAAAGGGAACAGATTGTGTGGAAGTTCTAACGGT TGATATGGAAGGTGAAGATCTTATCCTCACAAACAAAGAACTTGAGAAATTGACAAGGTTAAGGTATCTTAGTGTGTCCAATGCAAGACTAGCCGGAGAT TTCAAAGATGTTCTCCCAAACCTGCGTTGGCTACGATTGCACAGTTGCGACTCAGTTCCCACTGGCCTCTACCTCAAGAAGTTGGTACAATTTGAATTAG TTGATTGCTCAGTGAGAGATGGTTGGAAAGGATGGAATGAATTGAAGGTAGCACATAAGTTGAAAGCTGTGACACTAGAGCGATGCTTTAATTTGAATAA AGTTCCAGACTTTTCCCACTGCAGAGATCTAGAGTGGTTAGATTTTGATGAATGTAGGAACATGCGTGGAGAAGTGGACATCGGAAACTTCAAGAGTCTA AGATTTCTTCTGATCTCGAAGACTAAAATAACAAAGATTAAAGGCGAGATTGGAAGGTTACTAAATCTCAAATACCTTATTGCTGGTGGTTCGAGTTTGA AAGAAGTTCCAGCTGGTATTAGTAAGCTATCATCTCTTGAATTCTTGACCCTGGCATTAAATGATCCATACAAGTCGGACTTCACTGAAATGCTTCCCAC CAGTTTAATGTCCCTTTTAATCTCCAATGATACACAGAAATCCTGTCCGGACACTTCTTTGGAGAATCTACAAAGGCTGCCGAATCTCAGTAATCTGATT AATCTGTCGGTACTATACTTGATGGATGTCGGGATATGTGAGATTCTTGGTCTTGGAGAGCTCAAAATGCTAGAATATCTATCTATACAAAGAGCTCCTA GAATAGTACATTTGGATGGTCTTGAGAATCTCGTGCTTCTCCAACATCTGAGAGTAGAAGGCTGTCCGATCATAAAAAAGCTGCCTAGCCTAGTAGCTTT GACCAGATTAGAGCTACTATGGATTCAAGACTGCCCGCTTGTCACAGAAATTCATGGTGTGGGACAACTTTGGGAATCTTTATCAGACTTGGGTGTGGTT GGGTGTTCGGCCTTAATCGGTTTGGAGGCACTTCACTCCATGGTGAAATTGGAAAGATTGTTATTGGTAGGATGTTTGTTAACAGAAACAATGCCGCCTT CACTTTCCATGTTTACCAAACTGACGGAGCTAAGTTTATGTGCTATGCCATGGAAACAATTTCCTGACCTCTCTAATCTCAAGAATCTTAGAGTCTTGTG CTTGAGTTTCTGCCAAGAGCTGATCGAGGTTCCTGGCCTCGATGCATTGGAGTCGTTGGAATGGCTATCTATGGAGGGGTGCCGGTCGATTAGGAAGGTA CCTGATCTGTCTGGTCTGAAAAAGCTGAAAACATTAGATGTCGAGAGTTGCATACAGTTGAAAGAGGTCAGGGGGCTCGAAAGATTAGAGTCATTGGAAG AACTTAAGATGTCCGGTTGCGAGTCAATTGAGGAGTTGCCGAATCTATCCGGTCTGAAAAATTTGAGAGAGTTACTTCTCAAGGGATGCATACAGTTGAA AGAGGTGAATGGACTTGAGGGGTTGGAGCTGACTGTTTTTGAAGCACGCAAAAGGATAAAAGCCAAGTACGTAATGAACTCGGCTGCAAGGTACGGGAAG CAACTACTTACAAGCCGGAGCAATTGA
AA sequence Show only first row Show all	>Lus10020536 pacid=23172368 polypeptide=Lus10020536 locus=Lus10020536.g ID=Lus10020536.BGIv1.0 annot-version=v1.0 MMRSDSNGSTDSFHSCSSADLTPTSLPSGEYEVFLSFRGLDVRKTFADHLYTSLVRSKFRTFRDEEELEKGETIGPSLIRAITESKIYIPILTQNYASSK WCLQELAKMVECWKSGGGAKGQHIILPVFLFVDPRDVRHTESGSYKEAFEQHSQKHDPETVLEWKEALQEVGKMKGYHVTESDGHGSIIDKILTEVELHL GANYALVTDELVGIDSLVDEVVGLLNLDSSTSEKIIGIHGMGGLGKTTLAKAVYDKVSTKFERCYFLENIRDTLSEKNGVSILQNKIISGILKKDFNEAK NASDGIRIIRDRVCRHKLLIVLDDVDEKFQFDEVLGKLNNFSMDSRFLITTRDARGLELLRECKMFELQEMSPDHSLTLFNKNAFGVDFPPKDYAILSNE FVQAAAGLPLYIKVIGSLLFRMDKIFWEEKLEEFKKISPTKVQERLKISYNELTYNEKQIFLDIACYFIGSYKIEPMRMWSDCDFYPESTIRSLIQRSLI KFQRSRIKSDILNTFWMHDHIIDLGRAIVREENNKKPYKRSRIWSNKDAIDMLKHKKGTDCVEVLTVDMEGEDLILTNKELEKLTRLRYLSVSNARLAGD FKDVLPNLRWLRLHSCDSVPTGLYLKKLVQFELVDCSVRDGWKGWNELKVAHKLKAVTLERCFNLNKVPDFSHCRDLEWLDFDECRNMRGEVDIGNFKSL RFLLISKTKITKIKGEIGRLLNLKYLIAGGSSLKEVPAGISKLSSLEFLTLALNDPYKSDFTEMLPTSLMSLLISNDTQKSCPDTSLENLQRLPNLSNLI NLSVLYLMDVGICEILGLGELKMLEYLSIQRAPRIVHLDGLENLVLLQHLRVEGCPIIKKLPSLVALTRLELLWIQDCPLVTEIHGVGQLWESLSDLGVV GCSALIGLEALHSMVKLERLLLVGCLLTETMPPSLSMFTKLTELSLCAMPWKQFPDLSNLKNLRVLCLSFCQELIEVPGLDALESLEWLSMEGCRSIRKV PDLSGLKKLKTLDVESCIQLKEVRGLERLESLEELKMSGCESIEELPNLSGLKNLRELLLKGCIQLKEVNGLEGLELTVFEARKRIKAKYVMNSAARYGK QLLTSRSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27170			transmembrane receptors;ATP bi...		Lus10020536 [exp]	0	1
AT1G27170			transmembrane receptors;ATP bi...		Lus10020537 [exp]	1.4	0.8224
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10040583 [exp]	4.2	0.8188
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10040569 [exp]	5.5	0.8160
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10026378 [exp]	8.5	0.7650
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10018828 [exp]	9.8	0.7841
AT3G23700			Nucleic acid-binding proteins ...		Lus10021484 [exp]	13.1	0.7982
AT5G14660		DEF2, PDF1B, AT...	peptide deformylase 1B (.1.2)		Lus10013086 [exp]	15.4	0.7815
AT1G66930			Protein kinase superfamily pro...		Lus10008362 [exp]	19.4	0.7843
AT1G66980		GDPDL2, SNC4	Glycerophosphodiester phosphod...		Lus10022359 [exp]	20.0	0.7729
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Lus10030161 [exp]	24.5	0.7332

Compare expression of checked genes

Lus10020536 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.