Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 388 / 3e-115 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 358 / 1e-103 transmembrane receptors;ATP binding (.1.2) AT1G27180 336 / 2e-95 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G17680 327 / 3e-93 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G69550 315 / 1e-88 disease resistance protein (TIR-NBS-LRR class) (.1) AT2G14080 292 / 1e-81 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G44510 291 / 2e-81 TAO1 target of AVRB operation1 (.1) AT5G58120 278 / 1e-77 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G12010 280 / 2e-77 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G16870 278 / 2e-77 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020536 [exp] 1906 / 0 AT1G27170 392 / 8e-118 transmembrane receptors;ATP binding (.1.2) Lus10020524 [exp] 1873 / 0 AT1G27170 395 / 9e-119 transmembrane receptors;ATP binding (.1.2) Lus10020533 [exp] 1246 / 0 AT1G27170 405 / 1e-122 transmembrane receptors;ATP binding (.1.2) Lus10026961 [exp] 1232 / 0 AT5G36930 420 / 2e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10005373 [exp] 1185 / 0 AT5G36930 404 / 8e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020534 [exp] 1100 / 0 AT5G36930 414 / 1e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10035674 [exp] 968 / 0 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10010574 [exp] 958 / 0 AT5G36930 397 / 4e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10037406 [exp] 919 / 0 AT5G36930 395 / 5e-116 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G052000 [exp] 433 / 1e-131 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 426 / 2e-131 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T005501 [exp] 430 / 8e-131 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.005G206400 [exp] 418 / 2e-128 AT5G36930 587 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 418 / 2e-128 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 423 / 3e-128 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 422 / 1e-127 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 420 / 4e-127 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 417 / 7e-127 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001933 [exp] 419 / 1e-126 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10020537 pacid=23172364 polypeptide=Lus10020537 locus=Lus10020537.g ID=Lus10020537.BGIv1.0 annot-version=v1.0 ATGATGAGATCCGATTCCAATGGCTCCACCGACTCTTTCCATTCGTGTTCGTCTGCCGATTTGACACCCACCTCTCTTCCGTCTGGAGAGTATGAGGTTT TTTTGAGCTTTAGAGGCCTAGATGTCCGCAAAACTTTTGCTGACCATCTGTATACAAGCCTTGTTCGTTCCAAATTCCGCACATTTAGAGACGAGGAAGA GCTGGAAAAGGGGGGAGCTATTGGACCATCTATAATCCGAGCTATCACTGAATCTAAGATCTACATCCCGATCTTGACACCGAACTATGCTTCTAGCAAA TGGTGTCTCCAAGAGCTGGCTAAGATGGTGGAATGCTGGAAGAGTGGAGGAGGAGCAAAGGGCCAACACATCATCCTCCCTGTTTTCTTGTTCGTTGATC CAAGAGATGTCAGACATACAGAGTCTGGTTCTTACAAGGAAGCATTTGAACAACACAGGCAGAAGCATGATCCAGAAACCGTATTGGAATGGAAGGAAGC ACTTCAAGAGGTTGGCAAAATGAAAGGATATCATGTCACTGAGTCGGATGGACATGGATCCATAATAGACAAAATCCTCACTGAAGTTGAGTTACATTTA GGGGCTAATTACACATTAGTGACAGATGAGTTAGTGGGAATTGATTCTCTTGTAGATGAAGTTGTGGGATTGTTGAATCTGGATTCATCGACAAGTGAGA AAATTATTGGTATCCACGGTATGGGGGGCCTCGGTAAAACTACTCTTGCAAAGGCTGTTTATGATAAAGTTTCTACAAAATTTGAGCGTTGCTACTTTTT GGAGAACATCAGAGATACATTATCAGAAAAGAATGGGGTATCAATTCTGCAGAACAAGATTATCTCTGGTATTTTAAGGAAAGATTTTAACGAGGCTAAA AATGCTAGTGATGGAATCCGAATAATCAGAGATAGAGTTTGCAGGCACAAACTTCTTATTGTCCTTGATGATGTAGATGAGAAGTTCCAGTTCGATGATG TTTTAGGGAAATTGAACAATTTCTCAACAAATAGTCGATTTCTGATTACCACAAGAGATGCGAGAGGTTTAGAACTCCTTCAGGAATATAAGATGTTTGA GCTTCAAGAGATGAGTCCTGATCACTCCCTTACACTTTTCAACAAACACGCATTTGATGTGGATTGTCCTCCAAAAGATTATGCAATTTTGTCCAAGGAA TTTGTACAAGCAGCGGCTGGGTTACCTCTATATATTAAGGTCATCGGGTCTCTTTTGTTTCGCATGGACAAAATATTTTGGGAAGAAAAGCTTGAAGAAT TTAAAAAAATATCTCCGACTAAGGTACAAGAGAGATTGAAAATAAGTTATAACGAGTTAACTTACAATGAGAAGCAAATCTTTCTTGATATTGCTTGTTA TTTTATCGGATCAGTTAAAATAGAACCAATACTTATGTGGAACGACTGTGATCTTTATCCTGAAAGTACGATTAGATCTCTTACTCAAAGGTCATTAATA AAACTTCAGAGGTCGGAAATGAAAGGTGACGATGTAAATACGTTCCAGATGCACGATCACGTTAGAGATCTTGGTAGAGCCATTGTTCGTGAAGAAAATA ATCAAAAACCATACAAACGTAGCCGGATATGGTCCAACAAGGATGCCATCGACATGCTAAAACACAAAAAGGGAACAGATTGTGTGGAAGTTCTAACGGT TGATATGGAAGGTGAAGATCTTATCCTCACAAACAAAGAACTTGAGAAATTGACAAGGTTAAGGTATCTTAGTGTGTCCAATGCAAGACTAGCCGGAGAT TTCAAAGATGTTCTCCCAAACCTGCGTTGGCTACGATTGCACAGTTGCGACTCAGTTCCCACTGGCCTCTACCTCAACAAGTTGGTAGATTTGGAATTAG TTGATTGCTCCGTCAGAGATGGCTGGAAAGGATGGAATGAATTGAAGGTAGCACACAAGTTGAAAGCTGTGACACTAGAGCGATGCTTTCATTTGAAAAA AGTTCCAGACTTTTCCGACTGTGGAGATCTGGAGTTTTTAAATTTTGATGGATGTCGGAACATGCGTGGAGAAGTGGACATCGGAAACTTCAAGAGTCTA AGATTTTTTCAGATTGCCGATACTAAAATAACAAAGATTAAAGGCGAGATCGGAAGGTTACTAAATCTCAAATACCTTATTGTTGATGATTCGAGTTTGA AAGAAGTTCCAGCTGGAATTAGTAAGCTATCATCTCTTAAATGGTTGTCCCTGACATTAACTGATCCCTACAAGTTGGACTTCACTGAAATGCTTCCCGC CAGTTTAAGGATCCTTTTAATCTCCAATGATACACAGAAATCCTGTCCGGACACTTCTTTGGAGAATCTACAAAGGCTGCCGAATCTCAGTAATCTGATT AATCTGTCGGTGCTATTTTTGATGGATGTCGGGATAGGTGAGATTCTTGGTCTTGGAGAGCTCAAAATGCTAGAATATCTAATTATAGAAAGAGCTCCTA GAATAGTTCATTTGGATGGTCTTGAGAATCTCGTGCTTCTCCAACAACTGAGAGTAGAAGGTTGTCCGGTCTTAGGAAAGCTGCCCAGCCTAGTAGCTTT GATCCGGTTGGAGAAACTATGGATTGAAGACTGTCCGCTTGTCACAGAAATCCATGGTGTGGGACAACATTGGGAATCTTTATCAGACTTGCGTGTGGTT GGGTGTTCGGCCTTAACCGGTTTGGACGCACTTCACTCCATGGTGAAACTGGAATATTTGGTACTGGAAGGACCTGAATTAACAGAAAGAGTACTGTCTT CACTTTCTATAATCACCAAACTGGTGAAGCTAGGTTTATGGCATATGTCAAGAAGACAATTTCCTGACCTCTCCAATCTCAAGAATCTAAGAGCATTAGC CTTGAGTTTCTGCGAAGAGTTGATTGAGGTTCCTGCCCTCGATACGTTGGAGTCGTTGGAATATCTATCTCTGAAAGGGTGCCAGTCGATTAGAAAAGTA CCGGATCTCTCTGGTCTGAAAAAGCTGAAAAAATTAGATGTCGAGGGGTGCATACAGTTGAAAGAGGTCAGGGGGCTCGAAAGATTAGAGTCATTGGAAG AACTAAACATGTCCGGTTGCGAGTCGATTGAAAAGTTGCCGAATCTATCTGGTCTGAAAAATTTGAGAGAATTACTTCTTAAGGGATGCACACAGTTGAA AGAGGTGAATGGACTTGAGGGGTTGGAGCTGACTGTTTTTGAAGCACGCAAAAGGATAAAAGGCAAGTACGCAATCTACCTATTGTCAAACCCTAACGTG CTAAAGCTCTACCTATTCATAACAATCTTGGATACCTTCATGCTCACGCTAGCCCAAATCCCATCTTTCCACTCCCTCCGCCACATCAACCTCATCTCCT TACTCCTCACTCTCGCCTACAGCGCGTGCGCTACAGCCGCCTCGGTCCACATCGGCCACCACTCCTCTGCCTCTCATTCCCTCCCCGGAGACAACACCCA GGACCGACTATTCGGAGTATTCAACGCCGTCATTCTGGCCACGTTCTTCAGCGTGGCGATCTCTGGGTATTGGGCTTTTGGAAATGAGGCCCGTGGGCTT GTGCTTAGTAACTTTGTCGTCGACGGGAAGGCTCTTGTGCCGGAATGGTTCTTCTTGATGACTAATGTCTTCACCATTCTTCAGCTCTCCACCGTCGCCG TGGTAAGTACTATTTGA
AA sequence Show only first row Show all	>Lus10020537 pacid=23172364 polypeptide=Lus10020537 locus=Lus10020537.g ID=Lus10020537.BGIv1.0 annot-version=v1.0 MMRSDSNGSTDSFHSCSSADLTPTSLPSGEYEVFLSFRGLDVRKTFADHLYTSLVRSKFRTFRDEEELEKGGAIGPSIIRAITESKIYIPILTPNYASSK WCLQELAKMVECWKSGGGAKGQHIILPVFLFVDPRDVRHTESGSYKEAFEQHRQKHDPETVLEWKEALQEVGKMKGYHVTESDGHGSIIDKILTEVELHL GANYTLVTDELVGIDSLVDEVVGLLNLDSSTSEKIIGIHGMGGLGKTTLAKAVYDKVSTKFERCYFLENIRDTLSEKNGVSILQNKIISGILRKDFNEAK NASDGIRIIRDRVCRHKLLIVLDDVDEKFQFDDVLGKLNNFSTNSRFLITTRDARGLELLQEYKMFELQEMSPDHSLTLFNKHAFDVDCPPKDYAILSKE FVQAAAGLPLYIKVIGSLLFRMDKIFWEEKLEEFKKISPTKVQERLKISYNELTYNEKQIFLDIACYFIGSVKIEPILMWNDCDLYPESTIRSLTQRSLI KLQRSEMKGDDVNTFQMHDHVRDLGRAIVREENNQKPYKRSRIWSNKDAIDMLKHKKGTDCVEVLTVDMEGEDLILTNKELEKLTRLRYLSVSNARLAGD FKDVLPNLRWLRLHSCDSVPTGLYLNKLVDLELVDCSVRDGWKGWNELKVAHKLKAVTLERCFHLKKVPDFSDCGDLEFLNFDGCRNMRGEVDIGNFKSL RFFQIADTKITKIKGEIGRLLNLKYLIVDDSSLKEVPAGISKLSSLKWLSLTLTDPYKLDFTEMLPASLRILLISNDTQKSCPDTSLENLQRLPNLSNLI NLSVLFLMDVGIGEILGLGELKMLEYLIIERAPRIVHLDGLENLVLLQQLRVEGCPVLGKLPSLVALIRLEKLWIEDCPLVTEIHGVGQHWESLSDLRVV GCSALTGLDALHSMVKLEYLVLEGPELTERVLSSLSIITKLVKLGLWHMSRRQFPDLSNLKNLRALALSFCEELIEVPALDTLESLEYLSLKGCQSIRKV PDLSGLKKLKKLDVEGCIQLKEVRGLERLESLEELNMSGCESIEKLPNLSGLKNLRELLLKGCTQLKEVNGLEGLELTVFEARKRIKGKYAIYLLSNPNV LKLYLFITILDTFMLTLAQIPSFHSLRHINLISLLLTLAYSACATAASVHIGHHSSASHSLPGDNTQDRLFGVFNAVILATFFSVAISGYWAFGNEARGL VLSNFVVDGKALVPEWFFLMTNVFTILQLSTVAVVSTI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27170			transmembrane receptors;ATP bi...		Lus10020537 [exp]	0	1
AT1G27170			transmembrane receptors;ATP bi...		Lus10020536 [exp]	1.4	0.8224
AT1G27170			transmembrane receptors;ATP bi...		Lus10020524 [exp]	2.4	0.8378
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10026378 [exp]	3.5	0.7754
AT1G27340			Galactose oxidase/kelch repeat...		Lus10003118 [exp]	4.8	0.7081
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10037732 [exp]	8.5	0.7945
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10018828 [exp]	11.7	0.7600
AT5G36930			Disease resistance protein (TI...		Lus10042714 [exp]	13.0	0.7313
AT5G39040		AtALS1, ABCB27,...	ARABIDOPSIS THALIANA TRANSPORT...		Lus10007987 [exp]	13.8	0.6878
AT2G45910			U-box domain-containing protei...		Lus10036363 [exp]	16.7	0.7628
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10019014 [exp]	23.1	0.7034

Compare expression of checked genes

Lus10020537 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.