Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27810 867 / 0 ATNAT12 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12, nucleobase-ascorbate transporter 12 (.1.2.3) AT4G38050 553 / 0 Xanthine/uracil permease family protein (.1) AT2G34190 326 / 3e-104 Xanthine/uracil permease family protein (.1) AT2G05760 320 / 5e-102 Xanthine/uracil permease family protein (.1) AT5G62890 303 / 4e-95 Xanthine/uracil permease family protein (.1.2.3.4) AT1G60030 303 / 5e-95 ATNAT7 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) AT5G49990 291 / 1e-90 Xanthine/uracil permease family protein (.1) AT2G26510 279 / 7e-86 PDE135 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) AT1G10540 275 / 3e-84 ATNAT8 nucleobase-ascorbate transporter 8 (.1) AT1G49960 266 / 4e-81 Xanthine/uracil permease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009401 [exp] 993 / 0 AT2G27810 888 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12, nucleobase-ascorbate transporter 12 (.1.2.3) Lus10025716 [exp] 569 / 0 AT4G38050 824 / 0.0 Xanthine/uracil permease family protein (.1) Lus10035946 [exp] 564 / 0 AT4G38050 825 / 0.0 Xanthine/uracil permease family protein (.1) Lus10029238 [exp] 320 / 6e-102 AT2G34190 926 / 0.0 Xanthine/uracil permease family protein (.1) Lus10030014 [exp] 310 / 5e-98 AT2G05760 927 / 0.0 Xanthine/uracil permease family protein (.1) Lus10010707 [exp] 295 / 5e-92 AT5G62890 916 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10029191 [exp] 293 / 2e-91 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10004228 [exp] 291 / 1e-90 AT5G62890 972 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10032758 [exp] 289 / 1e-89 AT2G26510 751 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G148600 [exp] 934 / 0 AT2G27810 900 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12, nucleobase-ascorbate transporter 12 (.1.2.3) Potri.004G187900 [exp] 912 / 0 AT2G27810 880 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12, nucleobase-ascorbate transporter 12 (.1.2.3) Potri.007G011400 [exp] 559 / 0 AT4G38050 834 / 0.0 Xanthine/uracil permease family protein (.1) Potri.011G068200 [exp] 329 / 3e-105 AT2G34190 928 / 0.0 Xanthine/uracil permease family protein (.1) Potri.014G157800 [exp] 325 / 5e-104 AT2G05760 930 / 0.0 Xanthine/uracil permease family protein (.1) Potri.004G058800 [exp] 325 / 1e-103 AT2G34190 927 / 0.0 Xanthine/uracil permease family protein (.1) Potri.012G077400 [exp] 296 / 1e-92 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.015G072600 [exp] 293 / 2e-91 AT5G62890 908 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.008G146400 [exp] 291 / 8e-91 AT1G60030 881 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.014G035800 [exp] 286 / 8e-89 AT2G26510 734 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00860 [flax] [poplar] Xan_ur_permease Permease family
Representative CDS sequence Show only first row Show all	>Lus10020551 pacid=23172292 polypeptide=Lus10020551 locus=Lus10020551.g ID=Lus10020551.BGIv1.0 annot-version=v1.0 ATGTCCGGCACCGACCCGAAGACCCGGCCCAAACCTGGCCCGTTCCTGCCTACTCCGGAATCCTCACCATTGCCGCCTGCCACCTGGGCTAAGAAGACCG GCTTCCGTCCCAGATTCTCCGGCGAGACCAAGGAGCCGTCGTCGACGAGGTCGGTTCACGGGGCGGTTAATGGACAAGGGAATTCGGAAACTACGAGAAG AGCGACGAGGAATGAGGAAGTGATCGATGTGTTGCCGGAGGAGGAAGGGAATAACGGGAGGCACTCGCATATGAAGTACGAGCTGAGGGATACGCCAGGG CTTGTTCCCATTGGTTTCTACGGACTGCAGCATTACTTCTCGATGTTAGGATCGTTACTGTTGATTCCTCTTGTGATTGTTCCTGCAATGGGCGGCAGTC AAGAGGATACATCAATGGTGGTGTCGACAGTGCTGTTTATTTCAGGGGTGACGACTCTTCTGCATACCTCGTTTGGTTCGAGGTTGCCTCTAATACAAGG CCCCTCGTTTGTCTACCTTGCTCCGGCATTGGCAATAATTAACTCTCCAGAGTTTCAAGGACTAAATGGAAATAATTTCAAGCATATCATGAAGCGCCTC CAGGGTGCCATTATTATAGCTTCAGCCTTTCAGACAATACTTGGATACAGTGGCCTGATGTCTATAATTTTGAGATTGATCAATCCTGTAGTTGTTGCCC CAACAATAGCTGCTGTTGGGCTCTCTTTCTATAGCTACGGTTTCCCACTAGTTGGTACCTGTATCGAGATCGGCGCTGTGCAAATATTACTCGTTATCTT ATTTTCTCTGTACCTTCGGAAGATATCAGTATATGGTCATCGCATTTTCCTTATCTACGCTGTTCCTCTGGCTCTTGGCATCACATGGGCATTTGCATTC CTTCTAACAGAAACAGGAGCCTACGATTACAAGGGTTGTACTCCAACTATTCCTGCTTCGAATGTCATATCCGCAAGCTGCAGAAAGCGCATATCAAGGG TGAAGAACTGTCGAGTCGACACTTCTCATGCATTGAGTTCTTCTCCATGGTTTAGGTTTCCTTATCCTCTTCAATGGGGCACTCCGGTTTTTGACTGGAA AATGGCTCTGCTTATGTGTGTGGTGTCCATAATCTCATCCGTGGATTCGGTCGGATCTTACCATGCATCGTCATTGCTGGTGGCGTCTAGGCCTCCAACG GGAGGCGTCCTTAGTCGGGGGATCGGACTCGAAGGCCTCTCTAGCGTCCTGGCTGGCCTTTGGGGTACCGGAACCGGTTCTACGACTCTAACCGAAAACG TGCATACTCTTGCTGTGACGAAAATGGGCAGCCGGAGAGCAGTCGAGTTAGGCGCTTGTGTCTTGATCCTTTTATCGCTGATCGGCAAAGTCGGAGGGTT TATTGCATCAATTCCACAAGTCATGGTAGCAGCTCTACTCTGTTACATGTGGGCGATGCTAACCGCTTTGGGATTGTCGAATCTACGATACAGTGAGGCC GGAAGCTCCCGGAACATCATCATCGTCGGGCTATCCTTGTACTTCTCACTCTCCGTACCGGCATACTTCCAGCAATATGGCATCTCCCCCAATAGCAACT CGTCCGTTCCCAACTACTTCCAGCCGTATATAGTCGCGTCCCACGGCCCGATCCGCACCAAATTCGGAGGGCTGAACTACTTCCTGAACACTCTGCTCTC GCTCCACATGGTGATCGCGTTCGTCATGGCTGTAATCCTCGACAACACAGTGCCAGGAAGCCGGCTAGAGCGCGGGGTCTACGCCGACCGGGGGGGCCGG TGGGAGGGGGGGGTTTGCGTCTGGTGCGTGGCCAAAACGGCCAGGAGGGAGCCGGCCGTGACCAAGGACTACGAGTTGCCATTCAGAGTCGGCCGGCTTT TCAGATGGGTCAAGTGGGTCGGAATGTGA
AA sequence Show only first row Show all	>Lus10020551 pacid=23172292 polypeptide=Lus10020551 locus=Lus10020551.g ID=Lus10020551.BGIv1.0 annot-version=v1.0 MSGTDPKTRPKPGPFLPTPESSPLPPATWAKKTGFRPRFSGETKEPSSTRSVHGAVNGQGNSETTRRATRNEEVIDVLPEEEGNNGRHSHMKYELRDTPG LVPIGFYGLQHYFSMLGSLLLIPLVIVPAMGGSQEDTSMVVSTVLFISGVTTLLHTSFGSRLPLIQGPSFVYLAPALAIINSPEFQGLNGNNFKHIMKRL QGAIIIASAFQTILGYSGLMSIILRLINPVVVAPTIAAVGLSFYSYGFPLVGTCIEIGAVQILLVILFSLYLRKISVYGHRIFLIYAVPLALGITWAFAF LLTETGAYDYKGCTPTIPASNVISASCRKRISRVKNCRVDTSHALSSSPWFRFPYPLQWGTPVFDWKMALLMCVVSIISSVDSVGSYHASSLLVASRPPT GGVLSRGIGLEGLSSVLAGLWGTGTGSTTLTENVHTLAVTKMGSRRAVELGACVLILLSLIGKVGGFIASIPQVMVAALLCYMWAMLTALGLSNLRYSEA GSSRNIIIVGLSLYFSLSVPAYFQQYGISPNSNSSVPNYFQPYIVASHGPIRTKFGGLNYFLNTLLSLHMVIAFVMAVILDNTVPGSRLERGVYADRGGR WEGGVCVWCVAKTARREPAVTKDYELPFRVGRLFRWVKWVGM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10020551 [exp]	0	1
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Lus10000719 [exp]	5.1	0.7758
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10029258 [exp]	12.7	0.7538
AT1G63850			BTB/POZ domain-containing prot...		Lus10023573 [exp]	14.5	0.7289
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10011301 [exp]	15.6	0.7516
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10004434 [exp]	18.5	0.7342
AT5G06560			Protein of unknown function, D...		Lus10012288 [exp]	20.9	0.7430
AT3G20290		ATEHD1	EPS15 homology domain 1 (.1.2)		Lus10043181 [exp]	21.1	0.6571
					Lus10034050 [exp]	21.1	0.6053
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Lus10000135 [exp]	27.1	0.7429
AT1G68020		ATTPS6	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10021805 [exp]	27.9	0.7221

Compare expression of checked genes

Lus10020551 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.