Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05530 747 / 0 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1) AT1G09100 731 / 0 RPT5B 26S proteasome AAA-ATPase subunit RPT5B (.1) AT4G29040 290 / 1e-94 RPT2A regulatory particle AAA-ATPase 2A (.1) AT2G20140 290 / 3e-94 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) AT1G53750 274 / 2e-88 RPT1A regulatory particle triple-A 1A (.1) AT5G20000 273 / 3e-88 RPT6A AAA-type ATPase family protein (.1) AT5G19990 272 / 7e-88 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G58290 266 / 1e-85 RPT3 regulatory particle triple-A ATPase 3 (.1) AT1G53780 265 / 7e-83 peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (.1.2.3) AT1G45000 257 / 3e-82 AAA-type ATPase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029887 [exp] 770 / 0 AT3G05530 837 / 0.0 regulatory particle triple-A ATPase 5A (.1) Lus10031492 [exp] 750 / 0 AT3G05530 820 / 0.0 regulatory particle triple-A ATPase 5A (.1) Lus10001313 [exp] 293 / 3e-96 AT4G29040 673 / 0.0 regulatory particle AAA-ATPase 2A (.1) Lus10015524 [exp] 286 / 2e-94 AT2G20140 659 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10006976 [exp] 284 / 4e-92 AT4G29040 828 / 0.0 regulatory particle AAA-ATPase 2A (.1) Lus10011901 [exp] 285 / 1e-90 AT2G20140 844 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10031815 [exp] 275 / 2e-88 AT1G53750 828 / 0.0 regulatory particle triple-A 1A (.1) Lus10019995 [exp] 286 / 3e-88 AT2G20140 827 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10031243 [exp] 275 / 4e-87 AT1G53750 841 / 0.0 regulatory particle triple-A 1A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G025100 [exp] 751 / 0 AT3G05530 795 / 0.0 regulatory particle triple-A ATPase 5A (.1) Potri.013G016800 [exp] 749 / 0 AT3G05530 800 / 0.0 regulatory particle triple-A ATPase 5A (.1) Potri.014G194700 [exp] 290 / 2e-94 AT4G29040 829 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.002G252600 [exp] 287 / 3e-93 AT4G29040 838 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.001G161700 [exp] 276 / 4e-89 AT1G53750 809 / 0.0 regulatory particle triple-A 1A (.1) Potri.006G216600 [exp] 274 / 2e-88 AT1G53750 804 / 0.0 regulatory particle triple-A 1A (.1) Potri.018G056600 [exp] 270 / 5e-87 AT1G53750 803 / 0.0 regulatory particle triple-A 1A (.1) Potri.008G144100 [exp] 270 / 8e-87 AT5G19990 741 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.006G031000 [exp] 267 / 7e-86 AT5G58290 771 / 0.0 regulatory particle triple-A ATPase 3 (.1) Potri.016G028000 [exp] 266 / 1e-85 AT5G58290 781 / 0.0 regulatory particle triple-A ATPase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10020654 pacid=23140843 polypeptide=Lus10020654 locus=Lus10020654.g ID=Lus10020654.BGIv1.0 annot-version=v1.0 ATGGCGACGCCAATGGTGGAAGACACCAACTTCGAGGAGGATCAGCTAGCTTCCATGTCCACCGACGATATCCTCAGAGCTTCCAGGCTTTTGGATAACG AAATCCGGATTCTCAAGGAAGAATCGCAAAGGACGAATTTGGAACTTGAGTCGTATAAGGAGAAGATTAAGGAGAATCAGGAGAAGATTAAGCTGAACAA GCAGCTTCCTTACTTGGTTGGAAACATTGTTGAGATTCTGGAGATGAATCCGGAAGACGATGCTGAAGAAGACGGAGCGAACATTGACCTCGATTCCCAG AGGAAGGGGAAGTGTGTAGTTCTAAAGACTTCTACTCGTCAGACTATTTTTCTCCCTGTGGTCGGTCTCGTTGATCCTGACAAGTTGAAGCCGGGGGATT TGGTTGGAGTCAACAAAGACAGCTACCTGATCCTTGACACGCTTCCTTCCGAGTATGATTCGCGAGTTAAGGCTATGGAGGTTGATGAGAAGCCCACCGA GGACTACAACGACATTGGAGGCTTGGAGAAGCAGATCCAAGAACTAGTAGAGGCCATTGTGTTGCCTATGACTCACAAAGAGAGGTTTCAGAAGTTGGGG ATTCGGCCTCCGAAAGGGATCCTTTTGTATGGCCCTCCTGGTACTGGGAAAACATTGATGGCTCGTGCTTGTGCGGCCCAGACAAACGCTACTTTTCTGA AGCTTGCCGGTCCACAACTTGTGCAGATGTTCATTGGTGATGGAGCAAAGCTAGTCCGGGATGCATTTCAGCTTGCGAAAGAGAAGTCTCCATGCATCAT TTTCATTGATGAGATTGATGCAATTGGTACAAAGCGGTTCGACAGTGAGGTTAGCGGTGACAGAGAGGTGATTGCTGCAACGAATCGAGCTGATATCCTG GACCCTGCTCTTATGCGTTCTGGTCGTCTGGATCGTAAAATCGAGTTCCCTCATCCCACTGAAGAAGCAAGATCCCGTATCTTACAGATACACTCGAGGA AGATGAACGTCCACCCTGACGTGAACTTCGAGGAACTGGCACGCTCGACCGACGATTTCAATGGCGCGCAGCTGAAAGCTGTGTGTGTGGAGGCCGGAAT GCTTGCCCTTCGTCGCGATGCAACTGAGGTGAATCATGAGGATTTCAACGAAGGGATCATCCAGGTGCAAGCGAAGAAGAAAGCAAGCTTAAATTATTAT GCATAA
AA sequence Show only first row Show all	>Lus10020654 pacid=23140843 polypeptide=Lus10020654 locus=Lus10020654.g ID=Lus10020654.BGIv1.0 annot-version=v1.0 MATPMVEDTNFEEDQLASMSTDDILRASRLLDNEIRILKEESQRTNLELESYKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDDAEEDGANIDLDSQ RKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLG IRPPKGILLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVIAATNRADIL DPALMRSGRLDRKIEFPHPTEEARSRILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY A

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Lus10020654 [exp]	0	1
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Lus10012507 [exp]	5.3	0.8882
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10037244 [exp]	9.3	0.8731
AT2G32910			DCD (Development and Cell Deat...		Lus10001728 [exp]	15.4	0.8417
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10035658 [exp]	24.8	0.8481
AT4G23100		ATECS1, CAD2, G...	ROOT MERISTEMLESS 1, PHYTOALEX...		Lus10035496 [exp]	25.8	0.7810
AT3G03570			Protein of unknown function (D...		Lus10005664 [exp]	25.9	0.8388
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Lus10031492 [exp]	29.2	0.8448
AT2G46900			unknown protein		Lus10010275 [exp]	35.2	0.8444
AT1G24265			Protein of unknown function (D...		Lus10011347 [exp]	37.3	0.8330
AT1G67325			Ran BP2/NZF zinc finger-like s...		Lus10037029 [exp]	37.5	0.8069

Compare expression of checked genes

Lus10020654 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.