Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58340 71 / 1e-12 MYB myb-like HTH transcriptional regulator family protein (.1.2) AT1G15720 69 / 4e-12 MYB TRFL5 TRF-like 5 (.1) AT1G72740 62 / 2e-10 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1.2) AT1G17520 62 / 3e-10 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1) AT1G49950 56 / 2e-08 MYB ATTRB1, TRB1 telomere repeat binding factor 1 (.1.2.3) AT3G12560 56 / 7e-08 ATTBP2, TRFL9 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) AT1G72650 56 / 9e-08 MYB TRFL6 TRF-like 6 (.1.2) AT1G17460 55 / 1e-07 MYB TRFL3 TRF-like 3 (.1.2) AT1G07540 55 / 1e-07 MYB TRFL2 TRF-like 2 (.1) AT3G49850 52 / 4e-07 MYB TBP2, TRB3, ATTRB3 TELOMERE-BINDING PROTEIN 2, telomere repeat binding factor 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007348 [exp] 343 / 4e-112 AT3G23730 355 / 2e-121 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10009912 [exp] 135 / 1e-33 AT1G15720 64 / 1e-10 TRF-like 5 (.1) Lus10024200 [exp] 133 / 7e-33 AT1G15720 65 / 5e-11 TRF-like 5 (.1) Lus10042209 [exp] 128 / 2e-31 AT1G15720 70 / 1e-12 TRF-like 5 (.1) Lus10008606 [exp] 98 / 2e-21 AT5G59320 84 / 3e-19 lipid transfer protein 3 (.1) Lus10017320 [exp] 65 / 1e-10 AT5G58340 76 / 8e-14 myb-like HTH transcriptional regulator family protein (.1.2) Lus10017319 [exp] 62 / 4e-10 AT5G58340 66 / 2e-11 myb-like HTH transcriptional regulator family protein (.1.2) Lus10000947 [exp] 60 / 4e-09 AT5G13820 455 / 5e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10024385 [exp] 59 / 1e-08 AT1G07540 310 / 7e-97 TRF-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G154500 [exp] 136 / 2e-33 AT5G58340 88 / 4e-18 myb-like HTH transcriptional regulator family protein (.1.2) Potri.008G057300 [exp] 58 / 2e-08 AT5G13820 427 / 8e-141 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Potri.006G147400 [exp] 56 / 2e-08 AT1G17520 209 / 2e-66 Homeodomain-like/winged-helix DNA-binding family protein (.1) Potri.006G054401 [exp] 57 / 3e-08 AT1G68030 104 / 1e-24 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.016G053300 [exp] 57 / 5e-08 AT1G68030 115 / 7e-28 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.010G202400 [exp] 56 / 5e-08 AT3G12560 461 / 1e-154 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) Potri.018G066300 [exp] 55 / 5e-08 AT1G72740 186 / 6e-58 Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Potri.003G063700 [exp] 56 / 6e-08 AT1G72650 333 / 7e-106 TRF-like 6 (.1.2) Potri.009G032000 [exp] 56 / 9e-08 AT1G07540 485 / 7e-164 TRF-like 2 (.1) Potri.001G241600 [exp] 55 / 1e-07 AT1G07540 375 / 6e-121 TRF-like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10020771 pacid=23140822 polypeptide=Lus10020771 locus=Lus10020771.g ID=Lus10020771.BGIv1.0 annot-version=v1.0 ATGGAACTGAAGAGAACGCAGCCATCTGAGGAAATGGACGGAGACATCATGCAGTGGACGCTAGAGTTCCTCTTGCGGGAGTGCACCAACGGCGGTTTAG TCACCAGCTTGCTTTCGAACATCCGTCTTCCTTTCCCAGCCGAGAACTCGCGGGTCAAGAAGACGATTGTACTGCGCTCAATCCAAGACCAATTAGGTAA AGGCTCTGTCTCCGAGAATATCCTTGATTGGCTTGAGAACTTAGAGGAAATCGATAGGAGAGATGAGATATCGGTATTGGAATCGATGAAACTTGCTTAT TGTGCTGTGGCCGTAGAGTGTACGCTGAGACGTGGCCTCAAGGAAGCGGTTGTTAGGATTTGGAAGGTTAGGATTCAGAGGCTGGTAGGGAAGAGTGAAT TGGTTAGTGGTGAGGTGCCGAGGCTTCAGCTTGAAGTGGAGATGGCAATTAAGGATTTGAATGCGCTTATGGTTGTCCAGAAGTGGAGTAAGAAACATAA TGCGTTGAAGTTGGTTCAAGATTATTTGAATGAGGCGTTTGGGATTATGGGACCTTCCTTTCTCCAACTTGCTGCTAGGCAACAGATGGAGATGGATAGT CATCACAAAATTGGCATAGTGAACGGGGATGGATCAGGTGATGCTGATCTTGGCAGGGCGGAGTGTGAAGTCACTCTGAATATGAATGGGACTTATGATA AACCTGAAGAGGATTCTGTTGGTGTGTTGGATGGCACAGTGAGTGTAGAAGAGCATCTTGGTGATGTTGCTGGAGGTAGGACTAAGGCATCACATGATGT AGATGATTCCAGGCCACACAATAAAGAAAAATTGAACAGGAAGAAAAGGAAGGATAGAAATTCTGATATTCCAGTGTGTTCTAGTGGTAAGGTGGCTGGT TCGATGACTGGGAAAGAACAAGTTTGTGATGAATCCGGTTCTGAACCTGTGGAGCTGCCTGACACCGGGGGCAGGGCAGAGGGTGAAGATACCACTAAGA AGAGTGAGAAGAAGAAGAAGAGGAAGGGTGCATCTGCATCTGATAAACGGAAGCATGCATCCCGTTCCCATGGACCAGTGAAAATTGCTGATGTCGGAGA ATTTGATGAAATTGGAGATCTTAATGTTGAAAGTAGAGATGGGAAAAATGTGGGAGCAAGTATATCTGTTACTAGTAATCAGGGGGTTCCTGTTGTTCAA GGTGGGAAAGATGTAGTTTCACCACCATATCAGATTCCTACTAGTTTACCATCTTCATCTGACAAAGGAAAGCATGTATCTCATTGCCATGGACAGGTTA AGATTGCTGATGTCGGTGAAACTAGAGATCTTTTCGTGGAAAGTAAAGATGGGGAAATTGTGGTAGCAAGTAGACCTGCCACTGGCAATCAGGGGGTTCC TGTAGCTGAAGGTGGGAAACATGTACATTCACCACAACGTCAGATTCCTGCTAGTTTAGCATCTGAGGCTGGAAATAAGAAGCCTGCGCTAGACAAGCAG AATGAGAAAGATTTAGATGCTGAAGCCACCGAAAACGCGAATGATAAAGGTGAGGGTTCTGCTTCTTCTGCCGGGAAAAGGCCACAAATGGAAACCCATA GGAGATTACCTGTATATCCTTTGAAGAAGTATGGAGACCTGAATTTACTTGAGAGGAGGAAGAAGAGGAAATGGTCCATTGAGGAGGAAACTGCGTTGAT CAATGGGGTCCAACAGTTTGGCCCTGGAGCCTGGAAAGACATTCTTGACTCCAGACGCGATCAATTTGACAACAGGTCCGAGGTCGATCTGAAAGATAAG TGGAGAAACATGACAAAGTGCAACCGTTGA
AA sequence Show only first row Show all	>Lus10020771 pacid=23140822 polypeptide=Lus10020771 locus=Lus10020771.g ID=Lus10020771.BGIv1.0 annot-version=v1.0 MELKRTQPSEEMDGDIMQWTLEFLLRECTNGGLVTSLLSNIRLPFPAENSRVKKTIVLRSIQDQLGKGSVSENILDWLENLEEIDRRDEISVLESMKLAY CAVAVECTLRRGLKEAVVRIWKVRIQRLVGKSELVSGEVPRLQLEVEMAIKDLNALMVVQKWSKKHNALKLVQDYLNEAFGIMGPSFLQLAARQQMEMDS HHKIGIVNGDGSGDADLGRAECEVTLNMNGTYDKPEEDSVGVLDGTVSVEEHLGDVAGGRTKASHDVDDSRPHNKEKLNRKKRKDRNSDIPVCSSGKVAG SMTGKEQVCDESGSEPVELPDTGGRAEGEDTTKKSEKKKKRKGASASDKRKHASRSHGPVKIADVGEFDEIGDLNVESRDGKNVGASISVTSNQGVPVVQ GGKDVVSPPYQIPTSLPSSSDKGKHVSHCHGQVKIADVGETRDLFVESKDGEIVVASRPATGNQGVPVAEGGKHVHSPQRQIPASLASEAGNKKPALDKQ NEKDLDAEATENANDKGEGSASSAGKRPQMETHRRLPVYPLKKYGDLNLLERRKKRKWSIEEETALINGVQQFGPGAWKDILDSRRDQFDNRSEVDLKDK WRNMTKCNR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58340	MYB		myb-like HTH transcriptional r...		Lus10020771 [exp]	0	1
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10028956 [exp]	1.0	0.9219
AT1G18460			alpha/beta-Hydrolases superfam...		Lus10042972 [exp]	4.0	0.9154
AT4G13630			Protein of unknown function, D...		Lus10022791 [exp]	4.9	0.8829
AT1G51550			Kelch repeat-containing F-box ...		Lus10033377 [exp]	12.2	0.8914
AT3G62880		ATOEP16-4	Mitochondrial import inner mem...		Lus10007878 [exp]	14.1	0.8734
AT4G01000			Ubiquitin-like superfamily pro...		Lus10012629 [exp]	17.5	0.8564
AT1G52540			Protein kinase superfamily pro...		Lus10023130 [exp]	18.5	0.8378
AT1G70160			unknown protein		Lus10029209 [exp]	19.3	0.8774
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10018310 [exp]	23.4	0.8785
AT5G50380		ATEXO70F1	exocyst subunit exo70 family p...		Lus10016764 [exp]	30.2	0.8673

Compare expression of checked genes

Lus10020771 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.