Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66900 434 / 6e-141 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G66910 377 / 6e-119 Disease resistance protein (CC-NBS-LRR class) family (.1) AT4G33300 282 / 3e-83 ADR1-L1 ADR1-like 1 (.1.2) AT1G33560 245 / 4e-70 ADR1 ACTIVATED DISEASE RESISTANCE 1, Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G47280 240 / 1e-69 ADR1-L3 ADR1-like 3 (.1) AT5G04720 244 / 2e-69 PHX21, ADR1-L2 PHOENIX 21, ADR1-like 2 (.1) AT5G66890 230 / 7e-68 Leucine-rich repeat (LRR) family protein (.1) AT5G66630 163 / 6e-42 DAR5 DA1-related protein 5 (.1) AT3G50950 110 / 1e-24 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G69550 101 / 1e-21 disease resistance protein (TIR-NBS-LRR class) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007359 [exp] 1360 / 0 AT5G66900 473 / 3e-154 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10022464 [exp] 551 / 0 AT5G66900 531 / 2e-177 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10034761 [exp] 248 / 1e-73 AT5G66900 197 / 1e-54 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10021769 [exp] 216 / 3e-58 AT4G33300 583 / 0.0 ADR1-like 1 (.1.2) Lus10032759 [exp] 191 / 2e-51 AT1G33560 543 / 0.0 ACTIVATED DISEASE RESISTANCE 1, Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10016770 [exp] 154 / 9e-39 AT5G66920 837 / 0.0 SKU5 similar 17 (.1) Lus10033299 [exp] 130 / 3e-34 AT5G66900 113 / 3e-29 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10016029 [exp] 109 / 3e-24 AT4G12010 451 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10012246 [exp] 99 / 5e-21 AT4G12010 396 / 9e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G039300 [exp] 753 / 0 AT5G66900 540 / 0.0 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.007G038700 [exp] 560 / 0 AT5G66900 481 / 3e-158 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.007G039100 [exp] 543 / 0 AT5G66900 474 / 3e-156 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.007G039000 [exp] 441 / 4e-145 AT5G66900 343 / 2e-107 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.007G038900 [exp] 314 / 7e-100 AT5G66900 336 / 4e-108 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.014G035700 [exp] 282 / 4e-83 AT4G33300 889 / 0.0 ADR1-like 1 (.1.2) Potri.002G129300 [exp] 281 / 8e-83 AT4G33300 902 / 0.0 ADR1-like 1 (.1.2) Potri.007G039201 [exp] 119 / 2e-31 AT5G66910 86 / 1e-20 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.002G056100 [exp] 110 / 1e-24 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G200800 [exp] 106 / 3e-23 AT3G14460 509 / 7e-157 LRR and NB-ARC domains-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05659 [flax] [poplar] RPW8 Arabidopsis broad-spectrum mildew resistance protein RPW8 CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10020779 pacid=23140944 polypeptide=Lus10020779 locus=Lus10020779.g ID=Lus10020779.BGIv1.0 annot-version=v1.0 ATGATACCAGGAACATCGTTTCGAGATGCTGCTATCGGAGCTGTAGCCGGAGAGCTACTCAAAGCAGTTCTGATAGCTCTACAGAAAGCAGCTGAGTTCA GACCTGTACTGGAAAGCCTCCATTCCACATTACAAACCATAACCCCAGTCGTTAAGGATATCCAAGGGCTGAACGAGAAGCTGGCGCGAAACCAGGATGA ATTAGAGCCTCTGATCAAAGAGATCGCTGGAGGCGTACAGCTTGTCCAGAAATGCTCGGCCGTCCGCTGGTACACCAGCTGGAAGAGGCCCTGGTACAGA GACAAACTCGTGAGCCTCGACGTATCGCTCACCAAGTTCTGTTCCGTTATTCTGCAGCTTCAGCAGTCGAGGGATATCAAGGAAACGTTGATCGGAGTGA ATCAGGTTTTGGGTAGAAAGCCGAGAAATGTAAAGGGATACTTTGTGCCCGAGGCTATTCCGAATCCTGTGGGATTCAGAGTTCCCCTTGCGGAACTGAA AATGGAGCTGTTCAAGGATGGAACTTCAACGCTTGTTTTGTCTGCCCCTCCTGGTTGTGGGAAAACCACTTTGGCTAAGCTTTTATGCAACGACACAGAT GTTAAAGAGAGGTTCAGAGACAACATCTTATTTATCCCCATGTCAAAGAAAGAAACAATGGAAGGCATAGTCCAGCAAGTATTCCAGCTCAAGGATCAAG GCGATCCTACGTTTCGAAGCGAAGAAGATGCGCGCAACCAGCTGGAACAACTCCTGAAGAATATCGGGCCGAATCCCATACTGTTGGTTCTGGATAATGT CTGGCCAGAATCTGTTTCCCTGCTGGAAAAATTGAAGTTCAACATTCATGGTTACAAGATATTGGCAACTTCGAGATCAACGTATCGCAATTACGCAACG TACAAGCTGAATCCATTGAATAAGAAGGATTCCAGGACACTTTTCGACAATTCAGCATTTTCCACGGGCCAACGCTCAGACATTCCAGAGGATGTTATTA GTCAGATAGTCAAAGAATGCAAAGGGTACCCGCTCGCCCTTACAATTGTTGGCAAATCACTGTGTGGACTCTCTGTTGAAGAGTGGAGAACAAGAGCAGT GGAGCTAGCAAAAGCTGGCCCAGTTTCGCAATGCGGGGAACTGGGCGAACTTTACAGTTGTCTTCAGCAAAGTTTGGATGCCTTGGACAAGACACCAACT ATCAAGGAATGCTTTATTGACATGGCTTTGTTCTCTAAGGATGATTTGGTTCCTGCAGCATCCCTCATTAACCTGTGGTCCGAGCTGTATAAATTCGACG AAGATGGAGTGCAGGCTTTAGCTAATCTTCATCAACTCTCTGCAAGGAACCTAGCTGATCTTATTGTCACAAGGACCGACGCAGAAGGATACAATCATCA CTATGTAACGCAGCACGATCTTCTCCGGGAGCTAATCATCTATCAAAACAACTTGGAGGCCTTTCAACAACGAGAGAGACTGATAATGGAGATTTTCAGA AATGAAGTTCCTGACTGGTGGACAGATAAAATGCAGCGTCTTGGTGTTCATTGTAGCATCCTCTCTATTTCCACAGATGAAAAGTTCTCGGGAATCTGGT GCAAAATCCAAGCACCGGAACTGAAGGCACTGGTTCTGAATTTCCGGACGAAAAGCTATCCACTGCCAGAGTTCTTAACAGGATCGGACGGGATGAAGTT CAATTCCTTGGAGAAAATCACTCTGGTCCTCTGCCATCTCGGCCAAGCTTTCTCACCCTCGACCCTGCTGATTTCGGTAGCCCTTCCAAACGTAAAAGAG ATCAACATTGACTACTGCAAAGATCTTGTCGAGTTACCCCTCGGTATATGTAAGCTTACAAAGCTGAAGACGCTCAGGATCACGAATTGCCATAACTTGG TCGCGATTCGCCCCGAGATGTGGAGGCTGAAGAATCTGGAAGAGTTGACTCTGAGTTCTTGCATTGGATTGGCAGAGCTTCCGGAAATGATCGGGAGCCT CGAAAATTTGAGGATCCTGGATATCTCGGAATGTGCAGATGTCAGGATACTGCCTGAAGAGATTGGAGAGCTGAGAAACCTGAGGAAGATTCAGATGATG GGTTGTTCGAGAAACTGTCACCTGCCGGATTCGATCCAGAACCTTGATTGTCTGGAGGAAGTCGGATGCGACGAAGAGACTGCAGTGTTATGGGAACCTT TTGGTCATGTTCTTAAGAATTTGAAGATTAAGGTTCATAAGGAGGATATCAACTTGAACTGGCTCCATGGTGGTCGGTTCTGA
AA sequence Show only first row Show all	>Lus10020779 pacid=23140944 polypeptide=Lus10020779 locus=Lus10020779.g ID=Lus10020779.BGIv1.0 annot-version=v1.0 MIPGTSFRDAAIGAVAGELLKAVLIALQKAAEFRPVLESLHSTLQTITPVVKDIQGLNEKLARNQDELEPLIKEIAGGVQLVQKCSAVRWYTSWKRPWYR DKLVSLDVSLTKFCSVILQLQQSRDIKETLIGVNQVLGRKPRNVKGYFVPEAIPNPVGFRVPLAELKMELFKDGTSTLVLSAPPGCGKTTLAKLLCNDTD VKERFRDNILFIPMSKKETMEGIVQQVFQLKDQGDPTFRSEEDARNQLEQLLKNIGPNPILLVLDNVWPESVSLLEKLKFNIHGYKILATSRSTYRNYAT YKLNPLNKKDSRTLFDNSAFSTGQRSDIPEDVISQIVKECKGYPLALTIVGKSLCGLSVEEWRTRAVELAKAGPVSQCGELGELYSCLQQSLDALDKTPT IKECFIDMALFSKDDLVPAASLINLWSELYKFDEDGVQALANLHQLSARNLADLIVTRTDAEGYNHHYVTQHDLLRELIIYQNNLEAFQQRERLIMEIFR NEVPDWWTDKMQRLGVHCSILSISTDEKFSGIWCKIQAPELKALVLNFRTKSYPLPEFLTGSDGMKFNSLEKITLVLCHLGQAFSPSTLLISVALPNVKE INIDYCKDLVELPLGICKLTKLKTLRITNCHNLVAIRPEMWRLKNLEELTLSSCIGLAELPEMIGSLENLRILDISECADVRILPEEIGELRNLRKIQMM GCSRNCHLPDSIQNLDCLEEVGCDEETAVLWEPFGHVLKNLKIKVHKEDINLNWLHGGRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66900			Disease resistance protein (CC...		Lus10020779 [exp]	0	1
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10001999 [exp]	1.0	0.9650
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10039702 [exp]	2.4	0.9545
AT1G69970		CLE26	CLAVATA3/ESR-RELATED 26 (.1.2)		Lus10010735 [exp]	5.3	0.9496
AT2G46495			RING/U-box superfamily protein...		Lus10025546 [exp]	5.7	0.9381
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10034869 [exp]	6.5	0.9359
AT5G36930			Disease resistance protein (TI...		Lus10004726 [exp]	7.3	0.9516
AT4G24450		PWD, GWD3, ATGW...	"phosphoglucan, water dikinase...		Lus10032829 [exp]	8.2	0.9342
AT5G24620			Pathogenesis-related thaumatin...		Lus10032914 [exp]	8.4	0.9470
AT2G37460			nodulin MtN21 /EamA-like trans...		Lus10025308 [exp]	9.4	0.8862
AT2G18196			Heavy metal transport/detoxifi...		Lus10008284 [exp]	10.4	0.9378

Compare expression of checked genes

Lus10020779 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.