Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09810 443 / 2e-156 Nucleotide-sugar transporter family protein (.1) AT4G39390 433 / 2e-152 NST-K1, ATNST-KT1 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3) AT1G34020 422 / 2e-148 Nucleotide-sugar transporter family protein (.1) AT1G21070 216 / 4e-67 Nucleotide-sugar transporter family protein (.1) AT1G76670 214 / 2e-66 Nucleotide-sugar transporter family protein (.1) AT5G42420 214 / 2e-66 Nucleotide-sugar transporter family protein (.1.2) AT2G30460 153 / 5e-43 Nucleotide/sugar transporter family protein (.1.2) AT1G06890 147 / 9e-41 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT2G28315 129 / 3e-34 Nucleotide/sugar transporter family protein (.1) AT5G55950 53 / 1e-07 Nucleotide/sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033531 [exp] 547 / 0 AT4G09810 543 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10006810 [exp] 441 / 4e-155 AT4G09810 542 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10005790 [exp] 434 / 8e-153 AT4G09810 536 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10035824 [exp] 228 / 7e-72 AT1G21070 545 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10036606 [exp] 224 / 2e-70 AT1G21070 547 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10008596 [exp] 157 / 2e-44 AT2G30460 569 / 0.0 Nucleotide/sugar transporter family protein (.1.2) Lus10021464 [exp] 131 / 1e-34 AT2G28315 527 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10041315 [exp] 129 / 3e-34 AT2G28315 528 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10037397 [exp] 128 / 4e-33 AT2G28315 527 / 0.0 Nucleotide/sugar transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G077900 [exp] 452 / 3e-160 AT4G39390 521 / 0.0 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3) Potri.002G064700 [exp] 444 / 5e-157 AT4G09810 531 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.005G196500 [exp] 436 / 9e-154 AT4G09810 543 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.005G086700 [exp] 428 / 2e-150 AT4G39390 457 / 1e-162 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3) Potri.005G260300 [exp] 230 / 8e-73 AT1G21070 510 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.002G000500 [exp] 228 / 7e-72 AT1G76670 528 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.019G128900 [exp] 157 / 8e-45 AT1G06890 550 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Potri.013G154800 [exp] 153 / 5e-43 AT1G06890 512 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Potri.009G011100 [exp] 132 / 3e-35 AT2G28315 529 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.004G211900 [exp] 130 / 1e-34 AT2G28315 530 / 0.0 Nucleotide/sugar transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10020837 pacid=23177970 polypeptide=Lus10020837 locus=Lus10020837.g ID=Lus10020837.BGIv1.0 annot-version=v1.0 ATGTCTTCGTCGAGTAAGACGGATAAGAAAGCGGCGGTTGATGCATCGGCATGGCTGTTCAACGTTGTCTCATCTGTTGTAATTATCCTTGTGAATAAGG CCTTGATGGCTACCTATGGCTTCAGCTTCGCTACGACCTTAACCGGTCTCCATTTTGGGACGACAACGTTGTTAACAATGGTACTTAGGTGGATGAAATA TATTCAGCCATCTCACCTGCCAGTACCCGAGCTTCTTAAGTTCGTTTTGTTTGCAAACTTCTCTGTTGTTGGAATGAACGTGAGCTTGATGTGGAACTCT GTTGGATTTTATCAGATTGCAAAGTTGACGATGATCCCAGTTTCGTGTTTTCTGGAAGTAGTCTTGGACAGTATGCAATATTCGAGGGACACAAAGCTCA GCATTGCAGTAGTTCTGCTTGGTGTTGGGGTATGTACTGTTACAGACGTCAGTGTGAACACCAAGGGATTTCTAGCTGCTGCAGTCGCTGTCTGGAGTAC TGCCCTGCAACAATATGTGAGTGAATCCTCATGCACTTCTTTAACTACTTCAAGTATACAAACCGGGGTGCTGTTTGAAAAGTTTGGTCCTGTGCAAGAA CAAGGTATAGGACTAATCTATGTCTTCTGGAGTTTGCTACAGTATGTACATTATCTTCAGCGGAGGTATTCTCTGAATTCGTTCAACTTGTTGGGTCACA CTGCTCCAGCTCAAGCGGCATCTCTGTTGGTGGTTGGGCCCTTTCTGGATTACTGGTTGACAAATAAAAGGGTCGATGCATATCCTTATTCCTCGATTTC TGTGATGTTCATAGTACTATCATGCACAGTCGCCATAGGAACAAACCTGAGCCAGTTCATCTGCATCGGCAGGTTCACCGCAGTCTCGTTCCAAGTGCTG GGTCACATGAAGACGATTCTCGTGCTGGTCTTGGGATTCGTTTTCTTTGGGAAAGACGGACTTAGTTTCCAGGTAGTTTTCGGTATGATCATTGCTGTGG CTGGGATGATTTGGTATGGCAATGCCTCCTCTAAGCCGGGAGGGAAGGAGCGCCGAAGTCTTCCAGCAAGCAGTACCACCAAGTTCCAGAAACTGGAAAC TGATGATGCTGATGAGAAAGTCTAG
AA sequence Show only first row Show all	>Lus10020837 pacid=23177970 polypeptide=Lus10020837 locus=Lus10020837.g ID=Lus10020837.BGIv1.0 annot-version=v1.0 MSSSSKTDKKAAVDASAWLFNVVSSVVIILVNKALMATYGFSFATTLTGLHFGTTTLLTMVLRWMKYIQPSHLPVPELLKFVLFANFSVVGMNVSLMWNS VGFYQIAKLTMIPVSCFLEVVLDSMQYSRDTKLSIAVVLLGVGVCTVTDVSVNTKGFLAAAVAVWSTALQQYVSESSCTSLTTSSIQTGVLFEKFGPVQE QGIGLIYVFWSLLQYVHYLQRRYSLNSFNLLGHTAPAQAASLLVVGPFLDYWLTNKRVDAYPYSSISVMFIVLSCTVAIGTNLSQFICIGRFTAVSFQVL GHMKTILVLVLGFVFFGKDGLSFQVVFGMIIAVAGMIWYGNASSKPGGKERRSLPASSTTKFQKLETDDADEKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09810			Nucleotide-sugar transporter f...		Lus10020837 [exp]	0	1
AT2G33390			unknown protein		Lus10023738 [exp]	2.0	0.8389
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10012109 [exp]	4.2	0.8195
AT5G20120			unknown protein		Lus10043283 [exp]	6.6	0.8123
AT1G72180			Leucine-rich receptor-like pro...		Lus10003503 [exp]	10.3	0.8542
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10034499 [exp]	11.7	0.8321
AT3G06145			unknown protein		Lus10004420 [exp]	15.3	0.7881
AT1G70230		AXY4, TBL27	ALTERED XYLOGLUCAN 4, TRICHOME...		Lus10010704 [exp]	17.7	0.8263
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10036378 [exp]	21.7	0.8314
AT2G17800		ARAC1, ATGP2, A...	RHO-RELATED GTPASES FROM PLANT...		Lus10041881 [exp]	24.1	0.8282
AT4G20880			ethylene-responsive nuclear pr...		Lus10038459 [exp]	25.9	0.7539

Compare expression of checked genes

Lus10020837 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.