Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08250 148 / 3e-39 GRAS GRAS family transcription factor (.1) AT1G14920 124 / 1e-30 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT1G66350 123 / 3e-30 GRAS RGL1 RGA-like 1 (.1) AT3G54220 122 / 1e-29 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT5G17490 120 / 3e-29 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT3G03450 120 / 4e-29 GRAS RGL2 RGA-like 2 (.1) AT2G01570 119 / 2e-28 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G55580 115 / 9e-28 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) AT5G41920 114 / 2e-27 GRAS GRAS family transcription factor (.1) AT5G66770 115 / 3e-27 GRAS GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033517 [exp] 851 / 0 AT4G08250 162 / 2e-44 GRAS family transcription factor (.1) Lus10008316 [exp] 175 / 1e-48 AT4G08250 444 / 5e-152 GRAS family transcription factor (.1) Lus10028056 [exp] 165 / 7e-46 AT4G08250 416 / 5e-143 GRAS family transcription factor (.1) Lus10033583 [exp] 136 / 2e-34 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10017626 [exp] 132 / 4e-33 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10040734 [exp] 119 / 2e-28 AT5G41920 410 / 1e-137 GRAS family transcription factor (.1) Lus10016496 [exp] 118 / 5e-28 AT3G54220 663 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10012554 [exp] 117 / 7e-28 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10003540 [exp] 116 / 1e-27 AT3G54220 423 / 1e-141 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G007100 [exp] 318 / 5e-104 AT4G08250 162 / 1e-44 GRAS family transcription factor (.1) Potri.005G190300 [exp] 292 / 8e-94 AT4G08250 138 / 7e-36 GRAS family transcription factor (.1) Potri.005G175300 [exp] 181 / 3e-51 AT4G08250 467 / 2e-161 GRAS family transcription factor (.1) Potri.002G086100 [exp] 177 / 1e-49 AT4G08250 468 / 6e-162 GRAS family transcription factor (.1) Potri.017G125200 [exp] 137 / 1e-34 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 132 / 5e-33 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.008G131700 [exp] 128 / 1e-31 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.006G114200 [exp] 124 / 3e-30 AT3G54220 639 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.016G143833 [exp] 118 / 3e-28 AT3G54220 679 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.015G008300 [exp] 116 / 3e-28 AT1G55580 398 / 3e-136 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10020857 pacid=23177930 polypeptide=Lus10020857 locus=Lus10020857.g ID=Lus10020857.BGIv1.0 annot-version=v1.0 ATGATGGAAATCGAAGAAGTAGCAGCCCATTTCCCCTTCAATCTGTCAAGCTATGAACAACAATGTAGCAGCAGCATGGAAGAAGCCATCTCTTCTCTCG AAAATACCACCGAAGAACCTTTCCATCTCAATAACTCAGACTGCTGGGAAATCCGCCTCATGGAGATCGAATCTGATCTCTTCATGGACTTGATCACCAG CTCGGTCTCCCCACTAAATACTCCATTAATGGAGGAAGAACATGAGGAAAATAACACCAACAGCAGGCTGCCAAGTTTGTTACTGATGGGAGCTGAAGCC ATTGATGCAGAGAACTGGCTGCTCTGTTCCTCTGTAATCGCTGAGCTCATGATCCACAATCAAAGCAACATCCTTTCTTCTTCTACCTCTTCTTCTTCTC TGGAAAGGCTAGCTGGATTCTTCACTCAAGGACTGATCAACAAGAACAAGATCAGTTTCGACGACGGCATTGATCGAAATGATCAGCATTCTGCAGATTC CTCCGTTTCCTCCCCTGCATTCCACATTCTTCAGGAGTTGTCTCCGTACATCAAATTCGGCCATTTTGCAGCCAACCAAGCGATTCTGGAGGCCAGTTTC GAGAATCGGAACATCCATGTGGTTGACTTTGACATCAACGAAGGTCTCCAGTGGCCCCCTCTAATGGCTGATCTCGCCGCGGTTGCAGGATCCTATCCGA ATCTAGATTCGCCGGCCTCCTTTAGACTAACAGCACTGATCCTGCCGAATGCTAGCGCCAGCAAATCCACGGTGCACCAGACGGGGAGGAGGCTGAAAGA GTACGCGGATTCGATCAACTTATCATTTGAATTCGACGCCATTCATCTGACCGATCTCGACACCATCCGAGTCGATCCAGGCCAAGCACTCATATCAAAT TGTATGATCCACCAACTCCACAGTCCCAACAGGAACTTCACACTGGTCAACACATTTCTAGCATCAAGTGTCAGGCTTTCCCCAAGGCTGGTAGTGTTGG TAGAGGAAGAGCTCTTCAACTCCTCCAAGACCATACCATCAATGCCATTCTCGGATTTCTTCTGCGAGGCCATCGAGCATTACAGTGCGATTTCGGATTC GTTGGCCGCAGATGGCCGGATCCACGGTAAGGGGATGGAGATGATGGAGAAGGATGTGTTGGGGAGAAGGGTAGTGGACAGTTTGGTTCAGTTTCCTTGT GGGGAAAGTGAGAAGTTTGGTTGGGAAAATGGGTTTGATTCATTGAAAAGTGAGTTCAAGGCTGTTCCTTTTAGCACTACCAATGTGTCACAAGCTAACT ACTTGGTGAGCTTGTTTAGTGGAGGGTATTGGGTTCAGCATGAGAGGTGTAGATTGGGTTTGTGTTGGAAGTCTAGGCCTTTGGCTACTGCTTCAATTTG GGTGCCAAAAGGTCTGAAAGGAAGAGGAAATGCATAA
AA sequence Show only first row Show all	>Lus10020857 pacid=23177930 polypeptide=Lus10020857 locus=Lus10020857.g ID=Lus10020857.BGIv1.0 annot-version=v1.0 MMEIEEVAAHFPFNLSSYEQQCSSSMEEAISSLENTTEEPFHLNNSDCWEIRLMEIESDLFMDLITSSVSPLNTPLMEEEHEENNTNSRLPSLLLMGAEA IDAENWLLCSSVIAELMIHNQSNILSSSTSSSSLERLAGFFTQGLINKNKISFDDGIDRNDQHSADSSVSSPAFHILQELSPYIKFGHFAANQAILEASF ENRNIHVVDFDINEGLQWPPLMADLAAVAGSYPNLDSPASFRLTALILPNASASKSTVHQTGRRLKEYADSINLSFEFDAIHLTDLDTIRVDPGQALISN CMIHQLHSPNRNFTLVNTFLASSVRLSPRLVVLVEEELFNSSKTIPSMPFSDFFCEAIEHYSAISDSLAADGRIHGKGMEMMEKDVLGRRVVDSLVQFPC GESEKFGWENGFDSLKSEFKAVPFSTTNVSQANYLVSLFSGGYWVQHERCRLGLCWKSRPLATASIWVPKGLKGRGNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08250	GRAS		GRAS family transcription fact...		Lus10020857 [exp]	0	1
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Lus10007404 [exp]	8.9	0.7814
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10028886 [exp]	14.1	0.7997
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10019058 [exp]	15.7	0.7801
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10036538 [exp]	18.8	0.6760
					Lus10017698 [exp]	19.4	0.7515
AT5G44960			F-box/RNI-like/FBD-like domain...		Lus10015246 [exp]	22.8	0.7536
AT4G35160			O-methyltransferase family pro...		Lus10023987 [exp]	22.8	0.7902
AT5G59540			2-oxoglutarate (2OG) and Fe(II...		Lus10000612 [exp]	27.1	0.7245
AT4G35160			O-methyltransferase family pro...		Lus10018629 [exp]	27.5	0.7683
AT4G25560	MYB	LAF1, ATMYB18	LONG AFTER FAR-RED LIGHT 1, my...		Lus10039213 [exp]	27.9	0.7557

Compare expression of checked genes

Lus10020857 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.