Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78080 174 / 1e-51 AP2_ERF CAF1, RAP2.4, WIND1 wound induced dedifferentiation 1, related to AP2 4 (.1) AT1G22190 147 / 3e-42 AP2_ERF RAP2.4 related to AP2 4, Integrase-type DNA-binding superfamily protein (.1) AT4G39780 139 / 5e-39 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G22200 131 / 7e-36 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G36060 125 / 2e-33 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G65130 107 / 6e-27 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G64380 103 / 8e-25 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G13620 100 / 1e-23 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G20880 94 / 1e-21 AP2_ERF AtERF53 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) AT4G28140 83 / 5e-18 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033463 [exp] 306 / 1e-102 AT1G78080 248 / 2e-80 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10016801 [exp] 163 / 3e-47 AT1G78080 245 / 3e-79 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10022497 [exp] 162 / 1e-46 AT1G78080 248 / 2e-80 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10000582 [exp] 132 / 7e-37 AT4G39780 208 / 2e-67 Integrase-type DNA-binding superfamily protein (.1) Lus10019665 [exp] 128 / 5e-35 AT4G39780 209 / 1e-67 Integrase-type DNA-binding superfamily protein (.1) Lus10003889 [exp] 114 / 5e-29 AT1G64380 197 / 4e-61 Integrase-type DNA-binding superfamily protein (.1) Lus10001898 [exp] 112 / 2e-28 AT1G64380 210 / 1e-65 Integrase-type DNA-binding superfamily protein (.1) Lus10039809 [exp] 99 / 5e-23 AT2G20880 186 / 1e-55 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) Lus10016669 [exp] 97 / 8e-23 AT4G13620 184 / 2e-55 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G094200 [exp] 216 / 8e-68 AT1G78080 228 / 1e-72 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.005G168700 [exp] 186 / 5e-56 AT1G78080 197 / 3e-60 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.007G090600 [exp] 175 / 2e-51 AT1G78080 205 / 4e-63 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.005G077300 [exp] 170 / 1e-49 AT1G78080 207 / 7e-64 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.001G092400 [exp] 106 / 3e-26 AT1G64380 181 / 1e-54 Integrase-type DNA-binding superfamily protein (.1) Potri.017G055400 [exp] 102 / 6e-24 AT4G13620 216 / 9e-66 Integrase-type DNA-binding superfamily protein (.1) Potri.003G139300 [exp] 100 / 9e-24 AT1G64380 173 / 1e-51 Integrase-type DNA-binding superfamily protein (.1) Potri.001G315300 [exp] 96 / 8e-22 AT4G13620 194 / 3e-57 Integrase-type DNA-binding superfamily protein (.1) Potri.013G135600 [exp] 93 / 1e-20 AT2G20880 180 / 2e-52 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) Potri.019G102200 [exp] 92 / 2e-20 AT2G20880 195 / 2e-58 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10020913 pacid=23178009 polypeptide=Lus10020913 locus=Lus10020913.g ID=Lus10020913.BGIv1.0 annot-version=v1.0 ATGGCAGCTACCATGGAATTTTTCAGTAGCGGACCAGTTCAGTCAGATCTATATGGAGGTAGTGAGCTGATGGAAGCACTTGAACCTTTTATGAAAAGTG CTTCTTCTCCTTCTTCTTCAGCTCCTCCTCCTCCTCCTCCACCATCTTTTATGCCTTCTCCAGAAACACTTGTTTCTTCTTCTTTTCCTCCACCTTCTTA CTCTTATGGAGATTACATCTCCTTTTCTTCACCTTCTTCTTTCCCTGCAGCTGCTCTTCCGCAATTTCCGCCCCCACAGCAGCAGCAGGCTTTTATTTAT CCAGACGGTTCCAACGGGTTTTTTTCGACCCAAGATCCGTTTCTCTACCAACAACCTGCACCGGTTCACCCGATGCAATATCAGATCCAGACTGACAACA TCAACAACAACCTCTCTTTCCAGAACCTTCCGGCTCAGCAGAATACTCTCAGCTTCCTTTCCCCTAAGGCTTTCCCGATGAAGCTGACCGGCTCTCCACC CAAGGCCACGAAGCTTTACCGCGGCGTTAGACAGAGGCACTGGGGGAAATGGGTGGCTGAGATCCGACTTCCGAAGAATCGGACCAGGCTCTGGCTCGGA ACCTTCGACACTGCCGAGGAGGCCGCCTTGGCTTACGACAAGGCGGCGTACAAGCTCCGTGGCGACTTTGCGAGGCTCAATTTCCCGAATCTCCGCCACC AAGGGTCGCTTATTGAAGGCAAGTTCGGCGAGTACAAGCCGCTTCATTCTACAGTCGACGCTAAGCTCCAAGCTATTTGTCAGAGCTTGGCCGAGACGGC TAAGAAGAAAGGGAAGGCTGTGGGAAAGAAGAAGTCGTCGAAGAAGAAGGATGAAGTAGTTGTTGTGAAGGAGGAGAAAGTGTCTCCGGTTGCAACGGAT CACAGCGATTTTTCAGGCGGGTCTTCTTCTTCTCCATTATCGGATCTGACGTTTCCGGATTATCAAGATGCGGCGGCGCCGTTGGATCTTGATTCCGGGA ATCTCAATCTGGAGAAGTATCCGTCTTACGAGATCGACTGGGATTCTATATTATCGTGA
AA sequence Show only first row Show all	>Lus10020913 pacid=23178009 polypeptide=Lus10020913 locus=Lus10020913.g ID=Lus10020913.BGIv1.0 annot-version=v1.0 MAATMEFFSSGPVQSDLYGGSELMEALEPFMKSASSPSSSAPPPPPPPSFMPSPETLVSSSFPPPSYSYGDYISFSSPSSFPAAALPQFPPPQQQQAFIY PDGSNGFFSTQDPFLYQQPAPVHPMQYQIQTDNINNNLSFQNLPAQQNTLSFLSPKAFPMKLTGSPPKATKLYRGVRQRHWGKWVAEIRLPKNRTRLWLG TFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSLIEGKFGEYKPLHSTVDAKLQAICQSLAETAKKKGKAVGKKKSSKKKDEVVVVKEEKVSPVATD HSDFSGGSSSSPLSDLTFPDYQDAAAPLDLDSGNLNLEKYPSYEIDWDSILS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10020913 [exp]	0	1
AT2G43290		MSS3	multicopy suppressors of snf4 ...		Lus10027701 [exp]	2.2	0.9022
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Lus10020077 [exp]	2.4	0.8910
AT5G07250		ATRBL3	RHOMBOID-like protein 3 (.1.2)		Lus10027436 [exp]	3.5	0.8895
AT5G51570			SPFH/Band 7/PHB domain-contain...		Lus10015032 [exp]	5.7	0.8877
AT1G18740			Protein of unknown function (D...		Lus10029782 [exp]	8.1	0.8558
AT5G11070			unknown protein		Lus10001943 [exp]	9.9	0.8651
AT2G25250			unknown protein		Lus10041025 [exp]	10.5	0.8741
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10016801 [exp]	11.6	0.8606
AT3G56880			VQ motif-containing protein (....		Lus10012292 [exp]	11.6	0.8519
AT4G33565			RING/U-box superfamily protein...		Lus10012745 [exp]	11.7	0.8711

Compare expression of checked genes

Lus10020913 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.