Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72230 125 / 2e-36 Cupredoxin superfamily protein (.1) AT1G22480 110 / 2e-30 Cupredoxin superfamily protein (.1) AT2G32300 92 / 9e-23 UCC1 uclacyanin 1 (.1) AT5G07475 89 / 2e-22 Cupredoxin superfamily protein (.1) AT2G44790 84 / 2e-20 UCC2 uclacyanin 2 (.1) AT2G26720 84 / 3e-20 Cupredoxin superfamily protein (.1) AT3G60270 84 / 4e-20 Cupredoxin superfamily protein (.1) AT2G31050 84 / 4e-20 Cupredoxin superfamily protein (.1) AT3G27200 82 / 7e-20 Cupredoxin superfamily protein (.1) AT5G26330 79 / 2e-18 Cupredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008720 [exp] 199 / 3e-65 AT1G72230 140 / 2e-42 Cupredoxin superfamily protein (.1) Lus10027043 [exp] 107 / 3e-29 AT1G72230 112 / 4e-31 Cupredoxin superfamily protein (.1) Lus10025580 [exp] 107 / 6e-29 AT1G72230 112 / 4e-31 Cupredoxin superfamily protein (.1) Lus10027143 [exp] 93 / 2e-23 AT2G32300 137 / 9e-40 uclacyanin 1 (.1) Lus10012085 [exp] 87 / 1e-21 AT5G07475 142 / 4e-43 Cupredoxin superfamily protein (.1) Lus10038098 [exp] 88 / 1e-20 AT1G45063 107 / 1e-27 copper ion binding;electron carriers (.1.2) Lus10002614 [exp] 83 / 2e-20 AT2G32300 100 / 1e-26 uclacyanin 1 (.1) Lus10006657 [exp] 86 / 4e-20 AT1G45063 106 / 1e-26 copper ion binding;electron carriers (.1.2) Lus10041570 [exp] 82 / 1e-19 AT3G27200 167 / 2e-53 Cupredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G101300 [exp] 152 / 9e-47 AT1G72230 131 / 6e-39 Cupredoxin superfamily protein (.1) Potri.002G101200 [exp] 152 / 4e-46 AT1G72230 129 / 2e-37 Cupredoxin superfamily protein (.1) Potri.014G049600 [exp] 96 / 8e-25 AT3G60270 111 / 8e-31 Cupredoxin superfamily protein (.1) Potri.003G150300 [exp] 94 / 3e-24 AT5G07475 178 / 2e-57 Cupredoxin superfamily protein (.1) Potri.001G332200 [exp] 91 / 6e-23 AT3G27200 171 / 5e-55 Cupredoxin superfamily protein (.1) Potri.001G080700 [exp] 90 / 1e-22 AT5G07475 164 / 1e-51 Cupredoxin superfamily protein (.1) Potri.003G047300 [exp] 90 / 2e-22 AT5G26330 121 / 2e-34 Cupredoxin superfamily protein (.1) Potri.013G061300 [exp] 85 / 5e-21 AT3G17675 102 / 1e-28 Cupredoxin superfamily protein (.1) Potri.006G067300 [exp] 86 / 2e-20 AT5G20230 97 / 2e-24 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Potri.007G120200 [exp] 85 / 5e-20 AT2G32300 118 / 3e-32 uclacyanin 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10020944 pacid=23177955 polypeptide=Lus10020944 locus=Lus10020944.g ID=Lus10020944.BGIv1.0 annot-version=v1.0 ATGGCAACCTCTGTCTCATATGTTCTAGCCCTCATTCTCTGCCTAGTTACGGTGGCTCTGCCTACCACTCTGGCCACCACTTACACAGTCGGCGACACCA GCGGCTGGGTAATTGGCTCGGACTACTCCACTTGGACCTCCGGCAAGACCTTCAAAGTTGGCGACAGCCTTGTGTTCAACTACGCGGGAGGGCACACGGT GGACGAGGTGAGCGGGAGCGACTACAACACGTGTACGGTGGGGAAATCAATCAGCTCCGACAACAGCGGAGCCACCACCGTCGCTCTCAAGACCGCCGGC ACCCATTACTTCATCTGCGGCGTGGCCGGCCACTGCGGCGGCGGTATGAAGCTCTCCGTAACAGTTGTGGCTGCAGGGTCCACCGCTCCCCCCACTACAT CAACTGCTTCCCCTGCATCTCCATCGTCCGGCGGCACTTCTACCGGAACCGCTACTCCGACTACCAACCGTCCGGCGTCTAATATGCCGGATTCTTCTTC CCTTGCCACTGTTACTCCGTCGATGGGAGCTGTTGTGGCTTCCGTTTTTGCAGCTGTTGCAGTCATGGTTTCGTCATCGTGA
AA sequence Show only first row Show all	>Lus10020944 pacid=23177955 polypeptide=Lus10020944 locus=Lus10020944.g ID=Lus10020944.BGIv1.0 annot-version=v1.0 MATSVSYVLALILCLVTVALPTTLATTYTVGDTSGWVIGSDYSTWTSGKTFKVGDSLVFNYAGGHTVDEVSGSDYNTCTVGKSISSDNSGATTVALKTAG THYFICGVAGHCGGGMKLSVTVVAAGSTAPPTTSTASPASPSSGGTSTGTATPTTNRPASNMPDSSSLATVTPSMGAVVASVFAAVAVMVSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72230			Cupredoxin superfamily protein...		Lus10020944 [exp]	0	1
AT1G72230			Cupredoxin superfamily protein...		Lus10008720 [exp]	1.4	0.9112
AT5G40630			Ubiquitin-like superfamily pro...		Lus10032107 [exp]	4.5	0.9101
AT1G73140		TBL31	Plant protein of unknown funct...		Lus10028141 [exp]	6.0	0.8775
AT1G76750			Protein of unknown function (D...		Lus10004598 [exp]	7.3	0.7955
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10032894 [exp]	8.1	0.9018
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10005614 [exp]	9.8	0.7936
AT4G19420			Pectinacetylesterase family pr...		Lus10033305 [exp]	12.6	0.8647
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10040697 [exp]	15.1	0.8773
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10001529 [exp]	17.3	0.7942
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Lus10001707 [exp]	18.3	0.8774

Compare expression of checked genes

Lus10020944 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.