Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28220 419 / 1e-146 ATPUP3 purine permease 3 (.1) AT2G33750 368 / 1e-126 ATPUP2 purine permease 2 (.1.2) AT1G28230 361 / 8e-124 ATPUP1, PUP1 purine permease 1 (.1) AT4G18220 178 / 1e-52 Drug/metabolite transporter superfamily protein (.1) AT1G30840 176 / 3e-51 ATPUP4 purine permease 4 (.1.2) AT4G18197 159 / 5e-45 PEX17, ATPUP7, AT4G18200 PEROXIN 17, ARABIDOPSIS THALIANA PURINE PERMEASE 7, purine permease 7 (.1) AT4G18205 158 / 8e-45 AT4G18200 Nucleotide-sugar transporter family protein (.1) AT2G24220 152 / 1e-42 ATPUP5 purine permease 5 (.1.2) AT4G18210 150 / 1e-41 ATPUP10 purine permease 10 (.1) AT1G44750 134 / 1e-35 ATPUP11 purine permease 11 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015906 [exp] 584 / 0 AT1G28220 406 / 2e-142 purine permease 3 (.1) Lus10041133 [exp] 482 / 1e-171 AT1G28220 392 / 1e-136 purine permease 3 (.1) Lus10036465 [exp] 476 / 2e-168 AT1G28220 394 / 1e-136 purine permease 3 (.1) Lus10035636 [exp] 353 / 1e-120 AT1G28220 346 / 3e-118 purine permease 3 (.1) Lus10010757 [exp] 353 / 1e-120 AT1G28220 350 / 8e-120 purine permease 3 (.1) Lus10020416 [exp] 347 / 4e-118 AT1G28220 341 / 2e-116 purine permease 3 (.1) Lus10015832 [exp] 341 / 6e-116 AT1G28220 348 / 5e-119 purine permease 3 (.1) Lus10008713 [exp] 296 / 5e-98 AT1G28220 288 / 2e-95 purine permease 3 (.1) Lus10008714 [exp] 294 / 2e-97 AT1G28220 286 / 7e-95 purine permease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G160300 [exp] 486 / 7e-173 AT1G28220 413 / 8e-145 purine permease 3 (.1) Potri.002G099600 [exp] 284 / 1e-93 AT1G28220 229 / 2e-72 purine permease 3 (.1) Potri.001G352100 [exp] 175 / 5e-51 AT4G18210 398 / 1e-137 purine permease 10 (.1) Potri.001G352200 [exp] 172 / 4e-50 AT4G18220 315 / 1e-105 Drug/metabolite transporter superfamily protein (.1) Potri.001G147600 [exp] 172 / 6e-50 AT4G18210 315 / 7e-105 purine permease 10 (.1) Potri.006G184900 [exp] 170 / 3e-49 AT2G24220 404 / 6e-141 purine permease 5 (.1.2) Potri.014G043900 [exp] 164 / 3e-47 AT1G44750 434 / 2e-152 purine permease 11 (.1.2.3) Potri.003G156900 [exp] 150 / 1e-41 AT1G30840 323 / 4e-108 purine permease 4 (.1.2) Potri.001G074100 [exp] 136 / 9e-37 AT1G30840 303 / 5e-101 purine permease 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10020950 pacid=23177974 polypeptide=Lus10020950 locus=Lus10020950.g ID=Lus10020950.BGIv1.0 annot-version=v1.0 ATGGCAGAAACCGACAAAAATGATACCAAGCAAGAGCAGGCTGATCATCAACCTGCAGCCACCGCCGCCGCCGCCGCGATGAAAAGGGTGTTGCTAATTA TAAACTGCATCATCCTAGCCATAGGCAACTGCGGCGGTCCACTAATCATGCGCCTCTACTTCCTCCACGGCGGCAAACGTGTCTGGCTATCTTCCTGGCT CGAAACCGGTGGCTGGCCCATCATGCTCCTCCCCCTCTCCATCGCCTACATCCTCCGCCGCCGCCACACATCCTCCACAACTTTCTTCCTCATCCAACGC CGCCTCCTCCTCTCCAGCGTCATCATCGGCACCCTCACTGGCTTCGACGACTACCTCTACGCCTACGGAGTCGCCCGACTCCCCGTCTCCACTTCCTCCC TCGTTCTAGCGACCCAGCTAGCTTTTACAGCTGGGTTTGCTTTCTTGCTGGTCAAGCAACGGTTCACGCCCTACACGGTCAACGCCGTCGTTTTGCTGAC TGTGGGGGCCGGTGTGCTGGCGATGCACTCGAGCAGCGACCGGCCAAAGGGGGAGTCCGGGAAGGAGTACGCTATGGGTTTCGTGATGACGCTGGTGGCG GCGGTGCTCTACGGGCTCATCTTGCCGCTGGTGGAGCTAGCGTATAAGAAATCCCGGCAGGAAGTGAGCTACACGGTGGTGCTTGAGTTTCAGATGGTTA TGAGCCTTTTCGCCACCGTAGTCTGCACCGTCGGCATGCTCGTTAACAACGACTTCCAGGCAATTCCAAGAGAGGCAAGGGAATCAAGTCTAGGAGAAAC AAAGTACTACGTTGTCCTGGTTTCCAGTGCCATCATCTGGCAGACTTTCTTCCTAGGAGCCGTAGGAGTCATCTTCGCCGGAAGCTCCTTGCTCTCCGGC ATCCTGATCGCCGTACTGCTGCCGATGACTGAAGTATTTGCTGTCATATTCTACAGTGAGAGTTTTCAGGCGGAGAAAGGCGTATCCCTTGGCCTTTCCC TTTGGGGTTTCGTTTCTTACTTTTACGGCGAAATCCGACAGAACAAGAAGAAAAAGAAGATGTTGAATTCCGCTCCTCAAACTGAAATGTCTGATCAGAA CAGTAATCAAGCGTGTGCTGTTGTCTGA
AA sequence Show only first row Show all	>Lus10020950 pacid=23177974 polypeptide=Lus10020950 locus=Lus10020950.g ID=Lus10020950.BGIv1.0 annot-version=v1.0 MAETDKNDTKQEQADHQPAATAAAAAMKRVLLIINCIILAIGNCGGPLIMRLYFLHGGKRVWLSSWLETGGWPIMLLPLSIAYILRRRHTSSTTFFLIQR RLLLSSVIIGTLTGFDDYLYAYGVARLPVSTSSLVLATQLAFTAGFAFLLVKQRFTPYTVNAVVLLTVGAGVLAMHSSSDRPKGESGKEYAMGFVMTLVA AVLYGLILPLVELAYKKSRQEVSYTVVLEFQMVMSLFATVVCTVGMLVNNDFQAIPREARESSLGETKYYVVLVSSAIIWQTFFLGAVGVIFAGSSLLSG ILIAVLLPMTEVFAVIFYSESFQAEKGVSLGLSLWGFVSYFYGEIRQNKKKKKMLNSAPQTEMSDQNSNQACAVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10020950 [exp]	0	1
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10018595 [exp]	2.6	0.7942
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10033214 [exp]	4.2	0.7583
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10023057 [exp]	6.2	0.7432
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10009684 [exp]	8.0	0.7427
AT5G65550			UDP-Glycosyltransferase superf...		Lus10026410 [exp]	9.9	0.6129
AT2G39210			Major facilitator superfamily ...		Lus10038682 [exp]	12.2	0.6360
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10009053 [exp]	15.2	0.7104
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10007849 [exp]	15.3	0.7339
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10001581 [exp]	22.8	0.7306
AT1G56430		ATNAS4	ARABIDOPSIS THALIANA NICOTIANA...		Lus10029843 [exp]	23.0	0.6745

Compare expression of checked genes

Lus10020950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.