Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17800 75 / 5e-18 AtENODL22 early nodulin-like protein 22 (.1) AT2G02850 74 / 1e-17 ARPN plantacyanin (.1) AT5G26330 67 / 1e-14 Cupredoxin superfamily protein (.1) AT4G12880 65 / 4e-14 AtENODL19 early nodulin-like protein 19 (.1.2) AT2G31050 61 / 5e-12 Cupredoxin superfamily protein (.1) AT2G32300 60 / 1e-11 UCC1 uclacyanin 1 (.1) AT3G60270 57 / 5e-11 Cupredoxin superfamily protein (.1) AT5G15350 57 / 5e-11 AtENODL17 early nodulin-like protein 17 (.1) AT3G27200 56 / 2e-10 Cupredoxin superfamily protein (.1) AT2G26720 54 / 9e-10 Cupredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041848 [exp] 86 / 3e-22 AT2G02850 130 / 4e-40 plantacyanin (.1) Lus10041849 [exp] 80 / 4e-20 AT2G02850 130 / 5e-40 plantacyanin (.1) Lus10041850 [exp] 79 / 1e-19 AT2G02850 121 / 1e-36 plantacyanin (.1) Lus10028640 [exp] 78 / 2e-19 AT2G02850 151 / 3e-48 plantacyanin (.1) Lus10028641 [exp] 78 / 2e-19 AT2G02850 151 / 3e-48 plantacyanin (.1) Lus10028395 [exp] 78 / 2e-19 AT2G02850 107 / 2e-31 plantacyanin (.1) Lus10018938 [exp] 77 / 6e-19 AT2G02850 151 / 2e-48 plantacyanin (.1) Lus10021925 [exp] 72 / 2e-16 AT5G26330 170 / 5e-54 Cupredoxin superfamily protein (.1) Lus10007026 [exp] 72 / 2e-16 AT2G32300 96 / 4e-25 uclacyanin 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G209300 [exp] 93 / 3e-25 AT2G02850 155 / 4e-50 plantacyanin (.1) Potri.002G074000 [exp] 83 / 3e-21 AT2G02850 154 / 1e-49 plantacyanin (.1) Potri.003G047300 [exp] 75 / 3e-17 AT5G26330 121 / 2e-34 Cupredoxin superfamily protein (.1) Potri.001G043600 [exp] 71 / 2e-16 AT5G15350 121 / 2e-35 early nodulin-like protein 17 (.1) Potri.002G241500 [exp] 68 / 2e-15 AT2G02850 122 / 8e-37 plantacyanin (.1) Potri.007G104600 [exp] 67 / 6e-15 AT1G17800 94 / 3e-25 early nodulin-like protein 22 (.1) Potri.008G151000 [exp] 67 / 1e-14 AT5G26330 183 / 2e-59 Cupredoxin superfamily protein (.1) Potri.006G259101 [exp] 65 / 5e-14 AT5G26330 142 / 2e-43 Cupredoxin superfamily protein (.1) Potri.010G089900 [exp] 64 / 2e-13 AT5G26330 187 / 7e-61 Cupredoxin superfamily protein (.1) Potri.017G088600 [exp] 64 / 2e-13 AT5G15350 194 / 5e-64 early nodulin-like protein 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10020984 pacid=23148965 polypeptide=Lus10020984 locus=Lus10020984.g ID=Lus10020984.BGIv1.0 annot-version=v1.0 ATGGAGAAAGCAGCTGCAGGCCGTGGATCATCAGTTTCGGTCCTCTGCTATTTCTGCATAATTGCGATGATATTGTTCCATGGTGAGACTGCCACTGCAA CAAAATCTTTCAAAGTTGGAGATGACGCTGGTTGGGCTATTGAGGTTGTAAATCGTTGGCCCGAGGCTAAATGCTTCAACGCCGGCGATATATTAGAATT CACATACAACTATGAATGGCACAATGTGATCGTGGCGAACAAGACAGAGTACGAGTCATGCACTCTCCCGATCAGAGGTGGCTCAGCTTTCCAGACCGGC GACGATTTCATTCCGTTGTACAAAGGTCACAACTACTTTTTTGATGGTGGCATTGGTCAGTGCCAACAAGGCTTTAAAATGACCATAGTCACTGGCCAGT GTAACTAA
AA sequence Show only first row Show all	>Lus10020984 pacid=23148965 polypeptide=Lus10020984 locus=Lus10020984.g ID=Lus10020984.BGIv1.0 annot-version=v1.0 MEKAAAGRGSSVSVLCYFCIIAMILFHGETATATKSFKVGDDAGWAIEVVNRWPEAKCFNAGDILEFTYNYEWHNVIVANKTEYESCTLPIRGGSAFQTG DDFIPLYKGHNYFFDGGIGQCQQGFKMTIVTGQCN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17800		AtENODL22	early nodulin-like protein 22 ...		Lus10020984 [exp]	0	1
					Lus10003448 [exp]	1.0	0.8928
AT1G68460		ATIPT1	Arabidopsis thaliana isopenten...		Lus10034334 [exp]	6.8	0.8269
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Lus10016861 [exp]	6.9	0.8263
					Lus10025316 [exp]	6.9	0.8576
AT2G40780			Nucleic acid-binding, OB-fold-...		Lus10030510 [exp]	8.5	0.8576
AT5G17760			P-loop containing nucleoside t...		Lus10041777 [exp]	9.6	0.7458
AT5G39200			unknown protein		Lus10030710 [exp]	9.8	0.8576
					Lus10016963 [exp]	10.2	0.7761
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001042 [exp]	10.2	0.8458
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10033233 [exp]	11.0	0.8576

Compare expression of checked genes

Lus10020984 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.