Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68670 133 / 3e-35 GARP myb-like transcription factor family protein (.1) AT2G03500 134 / 5e-35 GARP Homeodomain-like superfamily protein (.1) AT1G25550 128 / 1e-33 GARP myb-like transcription factor family protein (.1) AT1G13300 127 / 2e-33 GARP HRS1 HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1, myb-like transcription factor family protein (.1) AT4G37180 127 / 3e-33 GARP Homeodomain-like superfamily protein (.1.2) AT3G25790 120 / 9e-31 GARP myb-like transcription factor family protein (.1) AT1G49560 118 / 4e-30 GARP Homeodomain-like superfamily protein (.1) AT5G05090 73 / 2e-14 GARP Homeodomain-like superfamily protein (.1) AT2G40970 72 / 2e-14 GARP MYBC1 Homeodomain-like superfamily protein (.1) AT3G10760 74 / 3e-14 GARP Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023857 [exp] 583 / 0 AT2G03500 159 / 2e-44 Homeodomain-like superfamily protein (.1) Lus10012056 [exp] 267 / 2e-86 AT2G03500 164 / 2e-47 Homeodomain-like superfamily protein (.1) Lus10019639 [exp] 144 / 8e-40 AT4G37180 206 / 4e-64 Homeodomain-like superfamily protein (.1.2) Lus10009334 [exp] 144 / 1e-39 AT4G37180 213 / 5e-67 Homeodomain-like superfamily protein (.1.2) Lus10021699 [exp] 139 / 3e-37 AT1G25550 284 / 6e-94 myb-like transcription factor family protein (.1) Lus10043304 [exp] 137 / 1e-35 AT2G03500 341 / 3e-113 Homeodomain-like superfamily protein (.1) Lus10027927 [exp] 133 / 1e-35 AT2G03500 57 / 6e-09 Homeodomain-like superfamily protein (.1) Lus10034280 [exp] 132 / 4e-35 AT1G25550 266 / 3e-87 myb-like transcription factor family protein (.1) Lus10035043 [exp] 130 / 3e-34 AT1G68670 281 / 7e-93 myb-like transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G106600 [exp] 266 / 1e-85 AT2G03500 196 / 2e-58 Homeodomain-like superfamily protein (.1) Potri.004G144800 [exp] 263 / 2e-84 AT2G03500 189 / 2e-55 Homeodomain-like superfamily protein (.1) Potri.005G134600 [exp] 164 / 9e-47 AT4G37180 214 / 1e-66 Homeodomain-like superfamily protein (.1.2) Potri.007G039400 [exp] 158 / 7e-45 AT4G37180 216 / 2e-67 Homeodomain-like superfamily protein (.1.2) Potri.008G117500 [exp] 134 / 2e-35 AT1G68670 298 / 4e-99 myb-like transcription factor family protein (.1) Potri.018G074200 [exp] 134 / 4e-35 AT2G03500 298 / 6e-97 Homeodomain-like superfamily protein (.1) Potri.010G128900 [exp] 132 / 6e-35 AT1G25550 277 / 7e-91 myb-like transcription factor family protein (.1) Potri.006G155200 [exp] 124 / 2e-31 AT2G03500 259 / 8e-82 Homeodomain-like superfamily protein (.1) Potri.016G032600 [exp] 72 / 6e-14 AT3G10760 278 / 3e-92 Homeodomain-like superfamily protein (.1) Potri.019G020900 [exp] 72 / 1e-13 AT5G29000 306 / 4e-101 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10020995 pacid=23182321 polypeptide=Lus10020995 locus=Lus10020995.g ID=Lus10020995.BGIv1.0 annot-version=v1.0 ATGAGTTCGGTTCCGGCGGAACTGAGCAGTAACTTGTTCGATTTCAGGACGATGATGTCGTCGTCGTCGCCGTCGTCAAAGTTTGTCCCCATCGGCGATT TCCTCCGGACGAAGATGATCGGAGACGCGAAAGCGGCGGAGAAAACTGCTCGGTCTTCTCTTCCTAGAGCCGAGAGCTTGTTGAGAGAGCTCCAGGAGGA GATGAGGAGGATTGATCACGCTAAGATCCAGCTCCCTCTCTGCATGCTCCTCTTGAACGACACGATGATGGTTGTGAAGGAATCTGTGAAACGAGAGAAA CCACTGGTGTTGGAAGAGTTTATACCGCTGAAGAAAGACGAAGAATGTAAAGACGACGACAGTTTGGTACAAGCTGAGAAAGATTCGTGTAAAGATAAGA AGAGCTGGATGAGCTCGGTTCAGTTGTGGAGCTCTGATGATACAAGACAGGAGGTAAACAAGAAGGGGAATCGATGTGGAAATAAGGATACATTCTCAGC TAGTAAAAACTGGACTCCTGTTAATTTACCAATCAAGAATGTGGCTAAGTTATCATCAACGAAGGAGGAGAGTGGTAGAGAGGAAGACTTGGCAGCTCCT AGTCTGTCTCTTCAAACTCCAGGGATGAAGAACTTGTCTGAGGAATCGGGATCGACAGGCTCGCGAATTACCTCTAGCAGAGGAGGGATATCGTCTTCTG CACCTAATTCCCAATCCAGCTCTCATAAAGGACCGATCCTGCCTCTGCAGCCTTGTAGGAAGCAGAGGAGGTGTTGGTCACCTGAGCTTCACCGCCGCTT TGTGAATGCTTTGCAGCAGCTTGGAGGCTCCCAAGCTGCTACACCAAAGCAGATTAGAGAGATCATGCAAGTCGATGGCTTGACCAATGATGAAGTGAAG AGCCATTTGCAGAAATATCGGCTTCACACTCGAAGAATGGCGCCTGCTGGGACCGCTCCCGGAAACCAATCTCTCGTTGTTTTAGGGGGTTTGTGGATGT CACAAGAACAGTATGCAGAGTCCTCAAAGGCTGCTAGTTCCCAGTCTGGTTCTCCTCCAGGTCCCCTCGAGCTTGGTACAACACTTATGGAGGAGGACGA AGACGAGGATGATGATAAGGACGACGCTAAATCGGACAACCATAGCTGGAAAAGCCTTACTCCAAGATCGGCATCAGGAAGAGCTGGTGTATAG
AA sequence Show only first row Show all	>Lus10020995 pacid=23182321 polypeptide=Lus10020995 locus=Lus10020995.g ID=Lus10020995.BGIv1.0 annot-version=v1.0 MSSVPAELSSNLFDFRTMMSSSSPSSKFVPIGDFLRTKMIGDAKAAEKTARSSLPRAESLLRELQEEMRRIDHAKIQLPLCMLLLNDTMMVVKESVKREK PLVLEEFIPLKKDEECKDDDSLVQAEKDSCKDKKSWMSSVQLWSSDDTRQEVNKKGNRCGNKDTFSASKNWTPVNLPIKNVAKLSSTKEESGREEDLAAP SLSLQTPGMKNLSEESGSTGSRITSSRGGISSSAPNSQSSSHKGPILPLQPCRKQRRCWSPELHRRFVNALQQLGGSQAATPKQIREIMQVDGLTNDEVK SHLQKYRLHTRRMAPAGTAPGNQSLVVLGGLWMSQEQYAESSKAASSQSGSPPGPLELGTTLMEEDEDEDDDKDDAKSDNHSWKSLTPRSASGRAGV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10020995 [exp]	0	1
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Lus10034672 [exp]	1.4	0.8606
AT5G58610			PHD finger transcription facto...		Lus10025386 [exp]	2.4	0.8413
AT1G69420			DHHC-type zinc finger family p...		Lus10030426 [exp]	3.2	0.8016
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Lus10029266 [exp]	3.9	0.8182
AT2G44220			Protein of Unknown Function (D...		Lus10036985 [exp]	5.1	0.7833
AT4G32840		PFK6	phosphofructokinase 6 (.1)		Lus10005488 [exp]	7.7	0.7835
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10005649 [exp]	7.7	0.7933
AT5G65760			Serine carboxypeptidase S28 fa...		Lus10039645 [exp]	24.7	0.7727
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10002199 [exp]	32.1	0.8037
AT1G12420		ACR8	ACT domain repeat 8 (.1)		Lus10007004 [exp]	36.1	0.7647

Compare expression of checked genes

Lus10020995 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.