Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15010 172 / 2e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G41060 158 / 4e-42 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G06800 150 / 2e-40 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT3G56860 151 / 2e-39 UBA2A UBP1-associated protein 2A (.1.2.3.4.5) AT5G29000 107 / 6e-25 GARP PHL1 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) AT2G01060 103 / 2e-24 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT3G04450 105 / 4e-24 GARP Homeodomain-like superfamily protein (.1.2) AT2G22090 103 / 6e-24 UBA1A RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G28610 102 / 5e-23 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1) AT2G20400 101 / 7e-23 GARP myb-like HTH transcriptional regulator family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023817 [exp] 628 / 0 AT3G15010 188 / 5e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10023816 [exp] 412 / 1e-139 AT5G06800 224 / 2e-70 myb-like HTH transcriptional regulator family protein (.1.2) Lus10025418 [exp] 165 / 6e-45 AT3G15010 336 / 8e-113 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10015290 [exp] 159 / 7e-43 AT3G15010 335 / 2e-112 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032516 [exp] 156 / 9e-42 AT3G56860 405 / 6e-139 UBP1-associated protein 2A (.1.2.3.4.5) Lus10043016 [exp] 154 / 3e-40 AT3G56860 463 / 1e-160 UBP1-associated protein 2A (.1.2.3.4.5) Lus10022886 [exp] 112 / 3e-26 AT4G28610 310 / 7e-102 phosphate starvation response 1 (.1) Lus10024938 [exp] 112 / 3e-26 AT4G28610 314 / 2e-103 phosphate starvation response 1 (.1) Lus10008197 [exp] 110 / 2e-25 AT5G29000 318 / 3e-105 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G190900 [exp] 411 / 1e-139 AT3G15010 179 / 6e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G048100 [exp] 393 / 1e-132 AT3G15010 181 / 1e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G055400 [exp] 187 / 4e-53 AT3G15010 303 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G065200 [exp] 181 / 3e-51 AT3G15010 295 / 1e-97 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G220600 [exp] 168 / 3e-45 AT3G56860 232 / 1e-70 UBP1-associated protein 2A (.1.2.3.4.5) Potri.001G377400 [exp] 167 / 3e-45 AT3G15010 342 / 2e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.005G081600 [exp] 158 / 1e-42 AT2G41060 213 / 8e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G191000 [exp] 157 / 5e-42 AT5G06800 252 / 2e-80 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G047900 [exp] 155 / 2e-41 AT5G06800 233 / 3e-73 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G025600 [exp] 154 / 1e-40 AT3G56860 353 / 2e-117 UBP1-associated protein 2A (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10021035 pacid=23182313 polypeptide=Lus10021035 locus=Lus10021035.g ID=Lus10021035.BGIv1.0 annot-version=v1.0 ATGGTGGGGAAAATGAATGCTCCAAATGTTGATTTCCACGACGGACTTCTGATCAACAGTAATAATAACCAGTTATTCATGGGGCAGCAGCAGGAAATCT GGGGCAACATGGGGACCGCAGCCCGACTCGAATCTGCTAAGCCGCCGAGCAGCTGTATAGTGAGCAGGTTCGAGTCGCCAGCTTCGGCGTTCTACGCGAC GGAGAGGTACATGGGTCTTCAGCAGTATGATCATCACTTCTCCGGATCACATCAGGATTCATCACAGCTACAGCAGCTGATGAAACAGAGTAGTAATTAT TCAGTTTATCGCCGGCGTAATCAGTTGGAGCAGCTTGATTTCAAGCCCTTTCAATCAAACCTGCAGGATGAGAAAATGCAGGTTGGGGTGCCAATTTCAC AGATGGGTTTCCAGTCAAGGCATGATCAGAATGATCTGTCTCCAGGTGGCGGAGGTGGTGGTGGTTCGATGGGTTCGGGAGCCGGGCTATCGAATAAGAC TAGGATCAGATGGACACAGGATCTTCATGAGAAGTTTGTGGAGTGTGTCAATCGATTGGGAGGTGCAGACAAAGCAACTCCAAAGGCAATTCTGAAGCTG ATGGATTCTGAAGGACTCACCATCTTCCATGTCAAAAGCCATTTGCAGAAATACAGGATTGCGAAGTACATGCCAGACACATCTGAAGGAAAGGCGGATA GAAGAAGTGTCATTAATGATGTATCACAGCTTGACCCGAAAGCAATCTGGTTAACAATGGTGTTGCAGTGGATTTCAAATCCGGGAGGCGCATCAGCTAC AACTAGACGTCCAGAGGCGTCTCCACGAACAGCTGGAGGTAACAATATCATCAGGTTCCCGGACCTCAGCTGCTTCACTGAACAAGCCTTCAGAACCGCC TTCTCGATTACCGAAGAACCCAAGTACTCGTCGCCGGACCGGGCATCATCATCCATGGAGGAAATGAAGAAGCGGAAGATGGACGAGGCCATTAACGGTG GCGAAGCGGCGAATCAGGAGCTCCTTCGCTCTCTCCTCGACCCTCTCAGCAAAACCCAGCTCATCGATCTTCTTTCCAGACTAGGGACCCAATATCCTTC AATTGCAGAAGAAATTAAAAGTATAGCTATTGCGGATCCGGTCCATCGAAAGCTTTTTGTCCGTGGCTTAGCCTGGACTACCACTTCAGATTCCTTGTGT GCTGCATTTCGGATGCATGGCGAAATAGAAGAAGGGGCGGTGATCCATGACAAAGCAACGGGGAAGTCACGTGGTTATGGTTTTATTACATTCAACCATA TGGAATCAGCACAAAGTGCTTTGAAAGCACCTAGTAACCTGATTGATGGCCGGCTGGCTGTCTGTAACCTTGCTTGCGAGGGACTTAGTGGAGCAAGCAA TACCCCAGATCTAGCACAACGGAAACTGTATATTGGGGGTTTGTCCCCTGAGATTACAAGTGAGGCACTGCTTAAATATTTTGGAAGGCAGGGGGAAATC GAAGAAGGTTCTGTTGCATATGATAAGGATACCAACGAGTCACGTGGATTTGGCTTTGTCACATACAAGACGCTGGAGGCTGCAAAGAAAGCCTTAGATG ATCCTCAAAAGATACTTGGGCGTAGATCTCTGATTGTGAAGCTTGCAGATAGTAACAAGGGGAAAGCCGCCCATTTGCAAGCGGCCGCACCTGCACCTGT ACTGCCAATGGTTCAAGGGCCCTTTCCGACCGGATATGCACAGCCAGGAAGACCTCACGCTGGATTTCCACCTGCTGGCTACGCTTACCCTCAAGCACTA GGATCATACTCTCCTCCGCCCTACCAAATGCAGCCACAGGTCCTATATCTGCAAGGTTCCGCGAGGAAACACCAATCAGGGATATCAACGCCAGCACCCG TGGGGATGAGCGGGTATCCTTATTTCCATCCCAAGCAGTAG
AA sequence Show only first row Show all	>Lus10021035 pacid=23182313 polypeptide=Lus10021035 locus=Lus10021035.g ID=Lus10021035.BGIv1.0 annot-version=v1.0 MVGKMNAPNVDFHDGLLINSNNNQLFMGQQQEIWGNMGTAARLESAKPPSSCIVSRFESPASAFYATERYMGLQQYDHHFSGSHQDSSQLQQLMKQSSNY SVYRRRNQLEQLDFKPFQSNLQDEKMQVGVPISQMGFQSRHDQNDLSPGGGGGGGSMGSGAGLSNKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKL MDSEGLTIFHVKSHLQKYRIAKYMPDTSEGKADRRSVINDVSQLDPKAIWLTMVLQWISNPGGASATTRRPEASPRTAGGNNIIRFPDLSCFTEQAFRTA FSITEEPKYSSPDRASSSMEEMKKRKMDEAINGGEAANQELLRSLLDPLSKTQLIDLLSRLGTQYPSIAEEIKSIAIADPVHRKLFVRGLAWTTTSDSLC AAFRMHGEIEEGAVIHDKATGKSRGYGFITFNHMESAQSALKAPSNLIDGRLAVCNLACEGLSGASNTPDLAQRKLYIGGLSPEITSEALLKYFGRQGEI EEGSVAYDKDTNESRGFGFVTYKTLEAAKKALDDPQKILGRRSLIVKLADSNKGKAAHLQAAAPAPVLPMVQGPFPTGYAQPGRPHAGFPPAGYAYPQAL GSYSPPPYQMQPQVLYLQGSARKHQSGISTPAPVGMSGYPYFHPKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10021035 [exp]	0	1
AT5G06800	GARP		myb-like HTH transcriptional r...		Lus10023816 [exp]	1.0	0.9621
AT1G27990			unknown protein		Lus10015763 [exp]	3.0	0.9271
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10043161 [exp]	3.2	0.9060
AT2G39440			unknown protein		Lus10040607 [exp]	3.7	0.9408
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10020556 [exp]	4.5	0.9196
AT1G67950			RNA-binding (RRM/RBD/RNP motif...		Lus10034580 [exp]	4.7	0.9029
AT5G25090		AtENODL13	early nodulin-like protein 13 ...		Lus10003432 [exp]	5.0	0.8777
					Lus10016909 [exp]	7.2	0.8767
AT5G37730			unknown protein		Lus10033584 [exp]	9.2	0.9148
AT2G17700		STY8	serine/threonine/tyrosine kina...		Lus10004153 [exp]	11.2	0.9147

Compare expression of checked genes

Lus10021035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.