Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11900 498 / 2e-175 ANT1 aromatic and neutral transporter 1 (.1) AT2G42005 245 / 7e-77 Transmembrane amino acid transporter family protein (.1) AT4G38250 242 / 3e-75 Transmembrane amino acid transporter family protein (.1) AT5G65990 213 / 4e-64 Transmembrane amino acid transporter family protein (.1) AT5G15240 117 / 1e-28 Transmembrane amino acid transporter family protein (.1.2) AT2G41190 104 / 8e-24 Transmembrane amino acid transporter family protein (.1) AT3G09330 100 / 2e-22 Transmembrane amino acid transporter family protein (.1) AT5G02170 100 / 2e-22 Transmembrane amino acid transporter family protein (.1.2) AT3G28960 97 / 9e-22 Transmembrane amino acid transporter family protein (.1) AT3G09340 97 / 1e-21 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017224 [exp] 810 / 0 AT3G11900 502 / 3e-177 aromatic and neutral transporter 1 (.1) Lus10001390 [exp] 239 / 6e-74 AT2G42005 581 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10022995 [exp] 238 / 1e-73 AT2G42005 580 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10026549 [exp] 227 / 1e-69 AT2G42005 548 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10012824 [exp] 109 / 7e-26 AT5G15240 425 / 3e-147 Transmembrane amino acid transporter family protein (.1.2) Lus10005239 [exp] 105 / 3e-24 AT5G15240 509 / 4e-180 Transmembrane amino acid transporter family protein (.1.2) Lus10013835 [exp] 92 / 7e-22 AT2G42005 178 / 2e-55 Transmembrane amino acid transporter family protein (.1) Lus10030469 [exp] 95 / 7e-21 AT5G15240 405 / 4e-139 Transmembrane amino acid transporter family protein (.1.2) Lus10030683 [exp] 94 / 2e-20 AT5G15240 510 / 2e-180 Transmembrane amino acid transporter family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G064500 [exp] 535 / 0 AT3G11900 521 / 0.0 aromatic and neutral transporter 1 (.1) Potri.005G102300 [exp] 240 / 1e-74 AT4G38250 539 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G206800 [exp] 228 / 4e-70 AT2G42005 592 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.009G167900 [exp] 224 / 2e-68 AT4G38250 583 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.017G083700 [exp] 96 / 4e-21 AT3G28960 456 / 2e-159 Transmembrane amino acid transporter family protein (.1) Potri.008G086500 [exp] 91 / 1e-19 AT3G28960 411 / 4e-142 Transmembrane amino acid transporter family protein (.1) Potri.017G083500 [exp] 89 / 8e-19 AT5G15240 448 / 4e-156 Transmembrane amino acid transporter family protein (.1.2) Potri.010G169000 [exp] 86 / 4e-18 AT3G28960 381 / 2e-130 Transmembrane amino acid transporter family protein (.1) Potri.016G100300 [exp] 86 / 6e-18 AT5G02180 587 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.014G146700 [exp] 86 / 7e-18 AT5G16740 430 / 3e-148 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10021089 pacid=23182303 polypeptide=Lus10021089 locus=Lus10021089.g ID=Lus10021089.BGIv1.0 annot-version=v1.0 ATGGAGGAAGGACTCAAAGCCTCTGAAGTTCCTCTGCTCCCCGGCCACCACCGAGATTCAGGAACGGCTTCCACTGTTCAAACCATCGGCAACATCATCG TCTCCATCGTCGGCACCGGCATACTCGGCCTCCCTTACGCCCTCCGCGTCGCCGGCTGGTTTTCCGGCTCGTTGGCCATCGTCCTCGCCGGAATCTCCAC TTACTACTGCATGATCCTTCTCGTCCAATGCAGGAATAAAGTATCATCATCGGAATTGACCACAGAAACAACGACATACGGCGATCTGGGACAAAAGGCG TTGGGGAAAACAGGGCGATACTTAACAGAATCATTCATCTTGATTTCTCAATGTGGAGGCGCTGTTGCATATTTGCTCTTCATTGGTCAGAACCTTTCCT CAGTGCTCAACTTCAATGGCTTCACAACCTCCACGTTCATATTCATGCTGGTCCCAATCGAGGTGGCCCTGTGCTGGATTGGATCATTATCTGCGCTAGC TCCCTTCAGCATTTTCGCCGATGTGTGCAACCTGTTGGCAATGGCGATAGTGGTGAAAGAGGATGCTCAGAAGCTCTTTGGTGGTGGTGATTTCAAGTTC AGTGATAGGCAGGCCATCTCATCTGATCCTGCAGGATTTCCGTTTGCTCTGGGAATGGCTGTGTTCTGCTTTGAAGGGTTTGGAATGACACTGGCACTTG AGCAGTCGATGAAAGAGAGGGGAAAATTCCGCAGTGTTCTTACTAAGGCAGTTACTGGGATTGCTTCCTTGTATATTGTGTTTGCATTCTTCGGTTACAT GGCTTATGGTGATGAGACTAGAGATATCATTACTCTCAACTTGACTCAGAACTGGTCCAACATTGCTGTTCAGATCGGAATGTGCACTGGGCTGGTGTTC ACCTTCCCGATCATGGTACACCCGATTAACGAGATTGTGGAAGGGAAACTGAGAAAGATCAGGTGCTTCCAGAAGATGGATAACGAAGATCAGGGCTACC TGGCTTGGATCGGCAAGTCTGGAATTTATGTGTTCAGGGCCATTCTGATCACAGCTTTGGCGCTTGTAGCGTCATTCGTACCTGGGTTCGGGCAGCTCTC GTCGATCGTGGGGAGCAGCGTCTGCGCGTGCATCTCGTTCGTGCTGCCGGCTCTGTTTCACTTGAAACTATTGGGTCCGTCCCTGCCAGTTTGGAGAAAA GCCCTGGATTGCTTCATCATGGTTTGTGGGGTTGTGTTTGCGATTTATGGCACTGTCAGTACCATCGTTTTGTCAGGGAAACAAGTGGTTTTCATCGTTG CCAAGGAACGGTATGTCTCTTCAACCATGAAGTTGAAGAGAGTGCATATTTGA
AA sequence Show only first row Show all	>Lus10021089 pacid=23182303 polypeptide=Lus10021089 locus=Lus10021089.g ID=Lus10021089.BGIv1.0 annot-version=v1.0 MEEGLKASEVPLLPGHHRDSGTASTVQTIGNIIVSIVGTGILGLPYALRVAGWFSGSLAIVLAGISTYYCMILLVQCRNKVSSSELTTETTTYGDLGQKA LGKTGRYLTESFILISQCGGAVAYLLFIGQNLSSVLNFNGFTTSTFIFMLVPIEVALCWIGSLSALAPFSIFADVCNLLAMAIVVKEDAQKLFGGGDFKF SDRQAISSDPAGFPFALGMAVFCFEGFGMTLALEQSMKERGKFRSVLTKAVTGIASLYIVFAFFGYMAYGDETRDIITLNLTQNWSNIAVQIGMCTGLVF TFPIMVHPINEIVEGKLRKIRCFQKMDNEDQGYLAWIGKSGIYVFRAILITALALVASFVPGFGQLSSIVGSSVCACISFVLPALFHLKLLGPSLPVWRK ALDCFIMVCGVVFAIYGTVSTIVLSGKQVVFIVAKERYVSSTMKLKRVHI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11900		ANT1	aromatic and neutral transport...		Lus10021089 [exp]	0	1
AT1G07750			RmlC-like cupins superfamily p...		Lus10015219 [exp]	16.6	0.7942
AT2G44990		MAX3, CCD7, ATC...	carotenoid cleavage dioxygenas...		Lus10005653 [exp]	18.2	0.7068
AT5G56600		PRF3, PFN3	profilin 3 (.1.2)		Lus10043040 [exp]	42.1	0.6995
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Lus10009419 [exp]	49.4	0.6847
AT1G11360			Adenine nucleotide alpha hydro...		Lus10039730 [exp]	56.2	0.6775
AT3G19330			Protein of unknown function (D...		Lus10035125 [exp]	66.4	0.6953
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10014899 [exp]	95.8	0.6688
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Lus10023337 [exp]	148.7	0.6675
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10039114 [exp]	154.3	0.6572
					Lus10002975 [exp]	157.7	0.6732

Compare expression of checked genes

Lus10021089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.