Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23240 175 / 7e-55 AP2_ERF ERF1, ATERF1 ethylene response factor 1 (.1) AT2G31230 119 / 5e-33 AP2_ERF ATERF15 ethylene-responsive element binding factor 15 (.1) AT1G06160 118 / 1e-32 AP2_ERF ORA59 octadecanoid-responsive Arabidopsis AP2/ERF 59 (.1) AT5G43410 86 / 3e-21 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G04370 83 / 5e-20 AP2_ERF ATERF14 Ethylene-responsive element binding factor 14 (.1) AT5G51190 84 / 1e-19 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G23220 82 / 2e-19 AP2_ERF ESE1 ethylene and salt inducible 1, Integrase-type DNA-binding superfamily protein (.1) AT5G47220 83 / 3e-19 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT3G23230 79 / 3e-18 AP2_ERF ERF98 Integrase-type DNA-binding superfamily protein (.1) AT4G17500 81 / 4e-18 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011829 [exp] 315 / 2e-109 AT3G23240 209 / 4e-68 ethylene response factor 1 (.1) Lus10006579 [exp] 146 / 3e-43 AT3G23240 211 / 4e-69 ethylene response factor 1 (.1) Lus10014655 [exp] 145 / 9e-43 AT3G23240 202 / 3e-65 ethylene response factor 1 (.1) Lus10022015 [exp] 135 / 3e-39 AT3G23240 176 / 1e-55 ethylene response factor 1 (.1) Lus10003562 [exp] 124 / 1e-34 AT3G23240 146 / 1e-43 ethylene response factor 1 (.1) Lus10027469 [exp] 118 / 1e-32 AT3G23240 145 / 2e-43 ethylene response factor 1 (.1) Lus10033885 [exp] 117 / 1e-31 AT3G23240 142 / 7e-42 ethylene response factor 1 (.1) Lus10042557 [exp] 111 / 2e-30 AT3G23240 155 / 7e-48 ethylene response factor 1 (.1) Lus10022935 [exp] 114 / 4e-30 AT2G31230 145 / 4e-42 ethylene-responsive element binding factor 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G072300 [exp] 200 / 7e-65 AT3G23240 201 / 2e-65 ethylene response factor 1 (.1) Potri.008G166200 [exp] 198 / 5e-64 AT3G23240 202 / 1e-65 ethylene response factor 1 (.1) Potri.005G223200 [exp] 175 / 9e-55 AT3G23240 165 / 4e-51 ethylene response factor 1 (.1) Potri.002G039100 [exp] 166 / 3e-51 AT3G23240 147 / 3e-44 ethylene response factor 1 (.1) Potri.013G045200 [exp] 156 / 2e-47 AT3G23240 167 / 5e-52 ethylene response factor 1 (.1) Potri.019G014409 [exp] 152 / 5e-46 AT3G23240 161 / 1e-49 ethylene response factor 1 (.1) Potri.005G223300 [exp] 128 / 2e-36 AT3G23240 163 / 5e-50 ethylene response factor 1 (.1) Potri.002G039000 [exp] 124 / 6e-35 AT3G23240 138 / 2e-40 ethylene response factor 1 (.1) Potri.011G061700 [exp] 108 / 3e-29 AT3G23240 111 / 1e-30 ethylene response factor 1 (.1) Potri.004G051700 [exp] 97 / 5e-25 AT5G47220 111 / 1e-30 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10021193 pacid=23171408 polypeptide=Lus10021193 locus=Lus10021193.g ID=Lus10021193.BGIv1.0 annot-version=v1.0 ATGGCATCCCCAATTTTCCACTTCTCATCGCCGGAATCCTCTTCCTTCGGATCCCCGGAGCAATTCTCCAGTCAATCCCTCAACCAAACCCATCATCTAC CCTTCAACGAGAACGACTCCGAAGAGATGCTCTTGTTCGGCCTCATCGCCTCCAACAACAGGGAAACCAAACCAATCATCAAAGAAGAGGAAGTCAGCTC CTCCCCCGCCTACAAACCATCATCGCAGCCGCCGCCACCTAATAAGAAGGACAAGTCTTTCCGCGGAGTGAGGCGGAGGCCGTGGGGGAAATTCGCGGCG GAGATAAGGGATTCGACTCGGCACGGGGTCCGGGTTTGGCTTGGAACATTCGACAGCGCAGAGGCGGCCGCTCTGGCGTATGACCAGGCGGCGTTCTCTA TGAGGGGGCCGGCGGCGATAATGAATTTCCCGGTGGAGAGGGTGGTGGAGTCGCTGGAGGACATGGGCTGCAACGTACGGCGGGACGAAGAAGATGTGGA GAAGGAAGGTTGCTCGCCGGTGGTAGCGTTAAAGAGGAAGCACTCCATGAGGAGGAAACTGAACGGGCGGGGAGGGAAGAAGAGCGAAAGGGATCATTTG AATGTAGTGGTATTGGAGGATTTGGGAGCAGATTATTTGGAGGAACTGCTGATGAATTCTTCCGACCAAACCGCTGGCGTGCGTTGGTATAACTAA
AA sequence Show only first row Show all	>Lus10021193 pacid=23171408 polypeptide=Lus10021193 locus=Lus10021193.g ID=Lus10021193.BGIv1.0 annot-version=v1.0 MASPIFHFSSPESSSFGSPEQFSSQSLNQTHHLPFNENDSEEMLLFGLIASNNRETKPIIKEEEVSSSPAYKPSSQPPPPNKKDKSFRGVRRRPWGKFAA EIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGPAAIMNFPVERVVESLEDMGCNVRRDEEDVEKEGCSPVVALKRKHSMRRKLNGRGGKKSERDHL NVVVLEDLGADYLEELLMNSSDQTAGVRWYN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10021193 [exp]	0	1
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10006553 [exp]	2.6	0.8459
					Lus10029807 [exp]	3.5	0.8650
AT4G40020			Myosin heavy chain-related pro...		Lus10000283 [exp]	8.7	0.8351
AT4G35030			Protein kinase superfamily pro...		Lus10013566 [exp]	13.2	0.8930
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10019991 [exp]	20.2	0.8897
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10042486 [exp]	25.2	0.8498
AT1G66880			Protein kinase superfamily pro...		Lus10009151 [exp]	36.0	0.8518
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Lus10041111 [exp]	39.2	0.8276
AT1G01490			Heavy metal transport/detoxifi...		Lus10036395 [exp]	42.1	0.8448
AT1G70690		HWI1, PDLP5	PLASMODESMATA-LOCATED PROTEIN ...		Lus10030779 [exp]	43.5	0.7572

Compare expression of checked genes

Lus10021193 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.